Variant report

Variant	rs17166102
Chromosome Location	chr5:97903274-97903275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10515277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132943	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17132960	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17165383	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17166092	0.87[AFR][1000 genomes]
rs17166181	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17166186	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17842413	0.81[AFR][1000 genomes]
rs3905909	1.00[AMR][1000 genomes]
rs3909492	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860595	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6865012	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6865922	1.00[AMR][1000 genomes]
rs6881459	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6891350	1.00[AMR][1000 genomes]
rs6892978	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6897970	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7703206	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7732224	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97893000-97905200	Weak transcription	NHLF	lung
2	chr5:97900000-97905200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:97900400-97903800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:97900600-97906400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:97900800-97906400	Weak transcription	Fetal Intestine Large	intestine
6	chr5:97902800-97906400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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