Variant report

Variant	rs17166117
Chromosome Location	chr5:97905917-97905918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10515278	1.00[AMR][1000 genomes]
rs11948171	1.00[AFR][1000 genomes]
rs11949725	1.00[AFR][1000 genomes]
rs11952710	1.00[AFR][1000 genomes]
rs11953696	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166107	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166168	1.00[AFR][1000 genomes]
rs17166173	1.00[AFR][1000 genomes]
rs17166179	1.00[AFR][1000 genomes]
rs17166219	0.89[AFR][1000 genomes]
rs7723215	1.00[AMR][1000 genomes]
rs7727986	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97900600-97906400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97900800-97906400	Weak transcription	Fetal Intestine Large	intestine
3	chr5:97902800-97906400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:97903800-97907400	Enhancers	NHDF-Ad	bronchial
5	chr5:97905000-97907400	Enhancers	Osteobl	bone
6	chr5:97905000-97908200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:97905000-97908400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:97905200-97906800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr5:97905200-97907200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:97905200-97907400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:97905200-97907400	Enhancers	NH-A	brain
12	chr5:97905200-97907400	Enhancers	NHLF	lung
13	chr5:97905400-97906400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:97905400-97906800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:97905400-97907400	Enhancers	HSMM	muscle
16	chr5:97905600-97906400	Weak transcription	HSMMtube	muscle
17	chr5:97905600-97907000	Enhancers	HUVEC	blood vessel
18	chr5:97905600-97907200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:97905800-97906200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:97905800-97906200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr5:97905800-97906200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr5:97905800-97906800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:97905800-97907400	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links