Variant report

Variant	rs17166179
Chromosome Location	chr5:97921982-97921983
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11948171	1.00[AFR][1000 genomes]
rs11949725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11952710	1.00[AFR][1000 genomes]
rs11953696	0.81[AFR][1000 genomes]
rs11958713	1.00[AMR][1000 genomes]
rs17166107	0.90[AFR][1000 genomes]
rs17166117	1.00[AFR][1000 genomes]
rs17166168	1.00[AFR][1000 genomes]
rs17166171	1.00[AMR][1000 genomes]
rs17166173	1.00[AFR][1000 genomes]
rs17166177	1.00[AMR][1000 genomes]
rs17166219	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97921200-97922800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:97921400-97922200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:97921400-97922200	Enhancers	Osteobl	bone
4	chr5:97921400-97922800	Enhancers	NHLF	lung
5	chr5:97921400-97923000	Enhancers	NHDF-Ad	bronchial
6	chr5:97921600-97922800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:97921600-97923800	Weak transcription	Fetal Stomach	stomach
8	chr5:97921800-97922600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:97921800-97924200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr5:97921800-97925200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:97921800-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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