Variant report

Variant	rs17166186
Chromosome Location	chr5:97941606-97941607
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10515277	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17132943	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132960	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17165383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166102	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17166181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17842413	0.85[AFR][1000 genomes]
rs3905909	0.83[AMR][1000 genomes]
rs3909492	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6860595	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6865012	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6865922	0.83[AMR][1000 genomes]
rs6881459	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6891350	0.83[AMR][1000 genomes]
rs6892978	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6897970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7703206	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7732224	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv508372	chr5:97931331-97948860	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1832089	chr5:97934125-97976039	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97939800-97942000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:97940000-97942000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:97940000-97942200	Enhancers	Fetal Intestine Small	intestine
4	chr5:97940000-97943000	Enhancers	Fetal Intestine Large	intestine
5	chr5:97940600-97949200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:97941000-97942000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:97941000-97949600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:97941000-97949800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:97941200-97948200	Weak transcription	NHDF-Ad	bronchial
10	chr5:97941600-97945800	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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