Variant report

Variant	rs17166219
Chromosome Location	chr5:97974640-97974641
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10515279	1.00[AMR][1000 genomes]
rs11948171	0.89[AFR][1000 genomes]
rs11949725	0.89[AFR][1000 genomes]
rs11952710	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11953103	1.00[AMR][1000 genomes]
rs11953718	1.00[AMR][1000 genomes]
rs11954005	1.00[AMR][1000 genomes]
rs11954858	1.00[AMR][1000 genomes]
rs11956218	1.00[AMR][1000 genomes]
rs11957136	1.00[AMR][1000 genomes]
rs11957743	1.00[AMR][1000 genomes]
rs11959969	1.00[AMR][1000 genomes]
rs17165503	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166117	0.89[AFR][1000 genomes]
rs17166168	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166173	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166179	0.89[AFR][1000 genomes]
rs36072176	1.00[AMR][1000 genomes]
rs6873703	1.00[AMR][1000 genomes]
rs6874397	1.00[AMR][1000 genomes]
rs6886693	1.00[AMR][1000 genomes]
rs7731093	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1832089	chr5:97934125-97976039	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97967400-97975000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:97971800-97975000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:97972000-97975000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:97972000-97977600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:97972000-97977600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:97973000-97975400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:97973000-97975400	Enhancers	NHDF-Ad	bronchial
8	chr5:97973200-97975200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:97973200-97975200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:97973400-97975400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:97973400-97975400	Enhancers	Osteobl	bone
12	chr5:97973600-97975200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:97973600-97975600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:97973800-97975400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:97974000-97974800	Enhancers	Brain Germinal Matrix	brain
16	chr5:97974000-97974800	Enhancers	NH-A	brain
17	chr5:97974000-97975200	Enhancers	HSMM	muscle
18	chr5:97974000-97975400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:97974200-97975200	Enhancers	NHLF	lung
20	chr5:97974200-97975400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr5:97974400-97974800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:97974400-97975000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:97974400-97976600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:97974600-97975400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:97974600-97976800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:97974600-97977200	Weak transcription	HSMMtube	muscle
27	chr5:97974600-97977400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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