Variant report

Variant	rs17166367
Chromosome Location	chr5:98116433-98116434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10515285	0.89[LWK][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap]
rs11954623	1.00[AMR][1000 genomes]
rs11957518	1.00[AMR][1000 genomes]
rs1508794	1.00[AMR][1000 genomes]
rs1508795	1.00[AMR][1000 genomes]
rs17166354	1.00[AMR][1000 genomes]
rs17166368	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166461	0.89[LWK][hapmap];0.83[MKK][hapmap];0.86[YRI][hapmap]
rs17166471	0.85[YRI][hapmap]
rs2035229	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036691	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35394679	0.94[LWK][hapmap];0.93[YRI][hapmap]
rs3952932	1.00[AMR][1000 genomes]
rs55660533	1.00[AMR][1000 genomes]
rs57293752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58710516	1.00[AMR][1000 genomes]
rs6864720	0.94[LWK][hapmap];0.93[YRI][hapmap]
rs6890688	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6895731	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151405	1.00[AMR][1000 genomes]
rs73151407	1.00[AMR][1000 genomes]
rs73151426	1.00[AMR][1000 genomes]
rs73151428	1.00[AMR][1000 genomes]
rs73151441	1.00[AMR][1000 genomes]
rs73151444	1.00[AMR][1000 genomes]
rs73151454	1.00[AMR][1000 genomes]
rs73151459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151463	1.00[AMR][1000 genomes]
rs73151464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73153510	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7707936	1.00[AMR][1000 genomes]
rs7727349	0.82[LWK][hapmap]
rs906681	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98109600-98119200	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:98110200-98125200	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
3	chr5:98110400-98119200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:98110800-98118600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:98110800-98123200	Weak transcription	Aorta	Aorta
6	chr5:98111000-98118600	Weak transcription	Gastric	stomach
7	chr5:98111000-98128800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:98111000-98131800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:98111600-98131800	Weak transcription	Placenta	Placenta
10	chr5:98111800-98119000	Weak transcription	Spleen	Spleen
11	chr5:98111800-98120200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:98112000-98135800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:98112200-98117600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:98112200-98118800	Weak transcription	Brain Angular Gyrus	brain
15	chr5:98112400-98118200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:98112400-98120400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr5:98112400-98121600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr5:98112400-98122400	Weak transcription	Fetal Heart	heart
19	chr5:98113000-98118200	Weak transcription	Brain Anterior Caudate	brain
20	chr5:98113200-98120000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:98113400-98118200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr5:98113400-98120000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr5:98113400-98120800	Weak transcription	Fetal Brain Male	brain
24	chr5:98114000-98120200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr5:98114600-98116600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:98114600-98116600	Enhancers	Stomach Mucosa	stomach
27	chr5:98114600-98117800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:98114600-98119800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr5:98114600-98120800	Genic enhancers	Muscle Satellite Cultured Cells	--
30	chr5:98114800-98131400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr5:98115000-98116800	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:98115000-98117200	Transcr. at gene 5' and 3'	NHLF	lung
33	chr5:98115000-98117600	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr5:98115000-98118000	Strong transcription	HMEC	breast
35	chr5:98115000-98118600	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr5:98115000-98118800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:98115000-98122200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr5:98115000-98125400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:98115200-98116600	Strong transcription	Brain Cingulate Gyrus	brain
40	chr5:98115200-98116600	Strong transcription	Brain Germinal Matrix	brain
41	chr5:98115200-98116600	Transcr. at gene 5' and 3'	Osteobl	bone
42	chr5:98115200-98116800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr5:98115200-98116800	Strong transcription	Hela-S3	cervix
44	chr5:98115200-98117000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr5:98115200-98119000	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr5:98115200-98119200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr5:98115200-98119800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr5:98115200-98120200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
49	chr5:98115200-98120200	Strong transcription	HSMMtube	muscle
50	chr5:98115200-98120600	Genic enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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