Variant report

Variant	rs17166564
Chromosome Location	chr5:98355778-98355779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:98354255..98355887-chr5:98357343..98359494,2	K562	blood:
2	chr5:98263973..98268060-chr5:98355511..98358159,6	K562	blood:
3	chr5:98264797..98266835-chr5:98354593..98357011,2	K562	blood:
4	chr5:98355578..98358107-chr5:98362158..98365732,4	K562	blood:
5	chr5:98262156..98264317-chr5:98355438..98358771,4	K562	blood:

Variant related genes	Relation type
ENSG00000248489	Chromatin interaction
ENSG00000153922	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10515285	0.91[AFR][1000 genomes]
rs17166461	0.89[AFR][1000 genomes]
rs17166471	0.85[AFR][1000 genomes]
rs55654090	0.87[AFR][1000 genomes]
rs57249217	0.85[AFR][1000 genomes]
rs57253975	0.84[AFR][1000 genomes]
rs58477983	0.83[AFR][1000 genomes]
rs60298381	0.91[AFR][1000 genomes]
rs61515191	0.84[AFR][1000 genomes]
rs6864720	0.87[AFR][1000 genomes]
rs731496	0.82[AFR][1000 genomes]
rs73153600	0.87[AFR][1000 genomes]
rs73155434	0.85[AFR][1000 genomes]
rs73155446	0.82[AFR][1000 genomes]
rs73155478	0.84[AFR][1000 genomes]
rs73157407	0.87[AFR][1000 genomes]
rs73157426	0.91[AFR][1000 genomes]
rs73159415	0.89[AFR][1000 genomes]
rs73776061	0.94[AFR][1000 genomes]
rs7707061	0.96[AFR][1000 genomes]
rs7726385	0.91[AFR][1000 genomes]
rs7732611	0.87[AFR][1000 genomes]
rs963689	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826071	chr5:98312447-98358852	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1827754	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1837772	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1838335	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845131	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv599093	chr5:98344571-98356733	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv599099	chr5:98345182-98356733	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv599100	chr5:98345182-98357415	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1794778	chr5:98345182-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1825119	chr5:98345182-98358852	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv599103	chr5:98345287-98356733	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv599107	chr5:98345400-98356733	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv599113	chr5:98345632-98357415	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98353600-98358000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:98353600-98361600	Weak transcription	Small Intestine	intestine
3	chr5:98354600-98357000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:98354600-98357000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:98354800-98355800	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr5:98354800-98356800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:98354800-98357000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:98355000-98356200	Enhancers	Rectal Smooth Muscle	rectum
9	chr5:98355000-98356400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:98355000-98356400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:98355000-98356400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:98355000-98356400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:98355000-98356400	Enhancers	Stomach Mucosa	stomach
14	chr5:98355000-98356400	Enhancers	HSMM	muscle
15	chr5:98355000-98356400	Enhancers	K562	blood
16	chr5:98355000-98356600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:98355000-98356600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr5:98355000-98356600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:98355000-98356600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:98355000-98356600	Enhancers	Hela-S3	cervix
21	chr5:98355000-98356800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:98355000-98356800	Enhancers	NH-A	brain
23	chr5:98355000-98356800	Enhancers	Osteobl	bone
24	chr5:98355000-98358200	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr5:98355000-98358400	Enhancers	Fetal Intestine Small	intestine
26	chr5:98355000-98358600	Enhancers	Fetal Intestine Large	intestine
27	chr5:98355200-98356000	Enhancers	Colonic Mucosa	Colon
28	chr5:98355400-98356400	Enhancers	Colon Smooth Muscle	Colon
29	chr5:98355400-98356600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr5:98355400-98357000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr5:98355400-98357000	Enhancers	Liver	Liver
32	chr5:98355400-98357400	Enhancers	Duodenum Mucosa	Duodenum
33	chr5:98355600-98355800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:98355600-98355800	Enhancers	HSMMtube	muscle
35	chr5:98355600-98356000	Flanking Active TSS	HUVEC	blood vessel
36	chr5:98355600-98356000	Flanking Active TSS	NHDF-Ad	bronchial
37	chr5:98355600-98356400	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr5:98355600-98356400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr5:98355600-98356400	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr5:98355600-98356400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr5:98355600-98356400	Enhancers	Placenta Amnion	Placenta Amnion
42	chr5:98355600-98356400	Enhancers	NHEK	skin
43	chr5:98355600-98356600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr5:98355600-98356600	Enhancers	HMEC	breast
45	chr5:98355600-98356800	Enhancers	Adipose Nuclei	Adipose
46	chr5:98355600-98356800	Enhancers	A549	lung
47	chr5:98355600-98358400	Enhancers	HepG2	liver

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