Variant report

Variant	rs17166582
Chromosome Location	chr5:98363391-98363392
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:98241174..98243544-chr5:98361759..98364961,3	K562	blood:
2	chr5:98355578..98358107-chr5:98362158..98365732,4	K562	blood:
3	chr5:98263790..98266450-chr5:98362398..98365432,4	MCF-7	breast:
4	chr5:98362205..98363958-chr5:98366950..98369649,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248489	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12109288	0.82[YRI][hapmap]
rs17166397	1.00[AMR][1000 genomes]
rs17166527	1.00[AMR][1000 genomes]
rs17166529	1.00[AMR][1000 genomes]
rs17166530	1.00[AMR][1000 genomes]
rs17166548	1.00[AMR][1000 genomes]
rs17166551	1.00[AMR][1000 genomes]
rs17166576	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs325193	0.91[YRI][hapmap]
rs55842563	1.00[AMR][1000 genomes]
rs55918054	1.00[AMR][1000 genomes]
rs56037221	1.00[AMR][1000 genomes]
rs56301306	1.00[AMR][1000 genomes]
rs56367612	1.00[AMR][1000 genomes]
rs56380839	1.00[AMR][1000 genomes]
rs56393810	1.00[AMR][1000 genomes]
rs57883072	1.00[AMR][1000 genomes]
rs58634056	1.00[AMR][1000 genomes]
rs59602127	1.00[AMR][1000 genomes]
rs60347076	1.00[AMR][1000 genomes]
rs60955929	1.00[AMR][1000 genomes]
rs6863847	1.00[AMR][1000 genomes]
rs6890801	1.00[AMR][1000 genomes]
rs6890810	1.00[AMR][1000 genomes]
rs73155487	1.00[AMR][1000 genomes]
rs73155495	1.00[AMR][1000 genomes]
rs73155497	1.00[AMR][1000 genomes]
rs73155499	1.00[AMR][1000 genomes]
rs73157406	1.00[AMR][1000 genomes]
rs73157408	1.00[AMR][1000 genomes]
rs73157409	1.00[AMR][1000 genomes]
rs73157411	1.00[AMR][1000 genomes]
rs73157413	1.00[AMR][1000 genomes]
rs73157414	1.00[AMR][1000 genomes]
rs73157416	1.00[AMR][1000 genomes]
rs73157417	1.00[AMR][1000 genomes]
rs73157423	1.00[AMR][1000 genomes]
rs73157490	1.00[AMR][1000 genomes]
rs7705736	1.00[AMR][1000 genomes]
rs7711225	1.00[AMR][1000 genomes]
rs7717482	1.00[AMR][1000 genomes]
rs7717655	1.00[AMR][1000 genomes]
rs7724760	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7726071	1.00[AMR][1000 genomes]
rs7727357	1.00[AMR][1000 genomes]
rs7727987	1.00[AMR][1000 genomes]
rs7728879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98357400-98368400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:98358200-98366800	Weak transcription	K562	blood
3	chr5:98360000-98363400	Enhancers	Stomach Mucosa	stomach
4	chr5:98360200-98363400	Enhancers	Fetal Intestine Small	intestine
5	chr5:98360200-98369000	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:98361200-98363600	Enhancers	Adipose Nuclei	Adipose
7	chr5:98361200-98364400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr5:98361200-98368000	Weak transcription	Osteobl	bone
9	chr5:98361600-98366000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:98361800-98363400	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr5:98361800-98363600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr5:98361800-98363600	Enhancers	Liver	Liver
13	chr5:98361800-98366400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:98362000-98363400	Enhancers	Primary T cells fromperipheralblood	blood
15	chr5:98362000-98363400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr5:98362000-98364200	Enhancers	Thymus	Thymus
17	chr5:98362000-98366400	Weak transcription	Colonic Mucosa	Colon
18	chr5:98362000-98367800	Weak transcription	Placenta	Placenta
19	chr5:98362200-98368400	Weak transcription	Small Intestine	intestine
20	chr5:98362400-98363600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr5:98362400-98363600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr5:98362400-98363600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:98362400-98363800	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr5:98362400-98368400	Weak transcription	Brain Hippocampus Middle	brain
25	chr5:98362600-98363400	Flanking Active TSS	Dnd41	blood
26	chr5:98362600-98363600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr5:98362600-98363800	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr5:98362600-98364400	Enhancers	Fetal Thymus	thymus
29	chr5:98362800-98363400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr5:98362800-98363400	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr5:98362800-98363400	Active TSS	GM12878-XiMat	blood
32	chr5:98362800-98363600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:98362800-98363800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr5:98362800-98364000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr5:98362800-98366400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr5:98362800-98368400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr5:98363000-98363400	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr5:98363000-98363400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr5:98363000-98363400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:98363000-98363400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr5:98363000-98363400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr5:98363000-98363400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr5:98363000-98363400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
44	chr5:98363000-98363400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
45	chr5:98363000-98363400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:98363000-98363400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr5:98363000-98363400	Enhancers	Fetal Kidney	kidney
48	chr5:98363000-98363600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr5:98363000-98363600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr5:98363000-98363600	Enhancers	A549	lung

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