Variant report

Variant	rs17169503
Chromosome Location	chr7:137711614-137711615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10235324	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs10271444	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs10275371	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.98[EUR][1000 genomes]
rs11971315	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13235479	1.00[MEX][hapmap]
rs57516363	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58616293	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6955277	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73729542	0.96[EUR][1000 genomes]
rs7780522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137708200-137715000	Enhancers	Primary B cells from cord blood	blood
2	chr7:137708400-137714000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:137708800-137712800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr7:137709800-137712000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:137710000-137712400	Flanking Active TSS	GM12878-XiMat	blood
6	chr7:137711000-137715200	Enhancers	Primary B cells from peripheral blood	blood
7	chr7:137711200-137711800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr7:137711200-137712600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:137711200-137712800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:137711200-137712800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:137711400-137712200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr7:137711400-137712800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:137711600-137711800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:137711600-137712800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:137711600-137714000	Enhancers	Primary hematopoietic stem cells	blood
16	chr7:137711600-137714200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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