Variant report

Variant	rs17170743
Chromosome Location	chr7:147606790-147606791
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10085572	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10248399	0.85[ASN][1000 genomes]
rs10252313	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10254338	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs10259955	1.00[CEU][hapmap]
rs10264316	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10274088	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10278604	0.85[ASN][1000 genomes]
rs10278677	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1035083	1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10488353	1.00[CEU][hapmap]
rs1525256	1.00[CEU][hapmap]
rs1525258	1.00[CEU][hapmap]
rs16883720	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs17170691	1.00[CEU][hapmap]
rs17170714	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17170725	0.85[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17170738	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2080155	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2373272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28564993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4726890	1.00[CEU][hapmap]
rs6464848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977961	1.00[CEU][hapmap]
rs7782592	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7789789	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992368	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147601200-147609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:147606400-147607000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:147606400-147607200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:147606400-147607200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:147606400-147607200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:147606400-147607800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:147606400-147608600	Enhancers	Fetal Muscle Leg	muscle
8	chr7:147606600-147607000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:147606600-147607000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:147606600-147607200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:147606600-147608600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:147606600-147610200	Enhancers	Adipose Nuclei	Adipose

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