Variant report

Variant	rs17170796
Chromosome Location	chr7:147724398-147724399
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10264127	0.81[EUR][1000 genomes]
rs10264877	0.95[CEU][hapmap]
rs10279570	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs10280388	0.86[CEU][hapmap]
rs10281082	0.95[CEU][hapmap]
rs10500195	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10952721	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10952722	0.95[CEU][hapmap]
rs10952723	0.95[CEU][hapmap]
rs10952724	0.95[CEU][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10952728	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs12055952	1.00[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12531913	0.95[CEU][hapmap]
rs12532921	1.00[YRI][hapmap]
rs12537012	1.00[YRI][hapmap]
rs12539260	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12667149	0.95[CEU][hapmap]
rs12667799	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs12670399	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs12671605	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs12673714	0.95[CEU][hapmap]
rs12674206	0.86[CEU][hapmap]
rs12674208	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12703988	0.95[CEU][hapmap]
rs12703990	0.95[CEU][hapmap]
rs12703992	0.95[CEU][hapmap]
rs16882145	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs16883782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133865	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs17170795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962426	1.00[YRI][hapmap]
rs1990057	0.95[CEU][hapmap]
rs1990058	0.95[CEU][hapmap]
rs2373285	1.00[YRI][hapmap]
rs2373289	1.00[CEU][hapmap]
rs2527047	0.95[CEU][hapmap]
rs2527054	0.95[CEU][hapmap]
rs2527058	0.95[CEU][hapmap]
rs2527062	0.95[CEU][hapmap]
rs2527063	0.95[CEU][hapmap]
rs2527064	0.95[CEU][hapmap]
rs2527065	0.95[CEU][hapmap]
rs2527066	0.95[CEU][hapmap]
rs2527068	0.89[CEU][hapmap]
rs2707558	0.95[CEU][hapmap]
rs2707583	0.95[CEU][hapmap]
rs2710143	0.95[CEU][hapmap]
rs2710144	0.95[CEU][hapmap]
rs2710145	0.95[CEU][hapmap]
rs2710152	0.95[CEU][hapmap]
rs34395632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34607423	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35532322	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36041215	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4725761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs4726904	0.95[CEU][hapmap]
rs4726905	0.95[CEU][hapmap]
rs4726906	1.00[CEU][hapmap]
rs4726907	0.95[CEU][hapmap]
rs4726915	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57995398	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6960266	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs6979577	0.95[CEU][hapmap]
rs715183	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs757695	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs757697	0.95[CEU][hapmap]
rs9640248	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9640249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9640250	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147724200-147726200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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