Variant report

Variant	rs17171524
Chromosome Location	chr7:39114398-39114399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16880017	0.82[ASW][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap]
rs41389544	0.90[YRI][hapmap]
rs41437948	0.82[ASW][hapmap];0.84[LWK][hapmap];0.89[YRI][hapmap]
rs61529697	0.81[AFR][1000 genomes]
rs73371323	0.81[AFR][1000 genomes]
rs73373246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373258	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373263	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373267	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs940875	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39112200-39114400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:39113400-39115400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:39113400-39115400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:39113400-39115400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:39113600-39115600	Weak transcription	Fetal Lung	lung
6	chr7:39113600-39123400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:39113800-39115400	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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