Variant report

Variant	rs17173638
Chromosome Location	chr10:53013031-53013032
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11816607	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16913168	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16915917	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7083539	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7083820	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7094420	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7097901	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7903693	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7903707	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7920480	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	esv2757383	chr10:52995974-53015583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2759750	chr10:52995974-53015583	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv831874	chr10:53010357-53195508	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53006200-53015800	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:53006800-53017000	Weak transcription	Aorta	Aorta
3	chr10:53006800-53017600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:53007400-53016600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:53009600-53013600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:53010400-53013600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:53010600-53017200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:53010800-53015000	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:53010800-53015200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:53010800-53015200	Weak transcription	Psoas Muscle	Psoas
11	chr10:53011200-53016200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:53011200-53017200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:53011800-53015200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:53012000-53017400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:53012400-53013400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr10:53012400-53013400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:53013000-53017000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:53013000-53017000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:53013000-53022800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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