Variant report

Variant	rs17178080
Chromosome Location	chr14:37453631-37453632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:37452336..37454197-chr14:37472383..37474395,2	K562	blood:
2	chr14:37452118..37454136-chr14:37456115..37458874,2	MCF-7	breast:
3	chr14:37446964..37448491-chr14:37452531..37454879,2	MCF-7	breast:
4	chr14:37444902..37446852-chr14:37452169..37454015,2	K562	blood:
5	chr11:62573046..62574745-chr14:37452538..37454059,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162231	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10129948	0.94[EUR][1000 genomes]
rs10132205	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10141660	0.94[EUR][1000 genomes]
rs11848465	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105840	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17105951	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2022585	1.00[CEU][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes]
rs2022730	1.00[CEU][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes]
rs2056355	1.00[CEU][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2145131	0.94[EUR][1000 genomes]
rs28414995	0.95[EUR][1000 genomes]
rs28487989	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28540719	0.91[EUR][1000 genomes]
rs61989481	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61989484	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7142715	0.94[EUR][1000 genomes]
rs7142764	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7143069	0.94[EUR][1000 genomes]
rs7147216	1.00[CEU][hapmap];0.94[GIH][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes]
rs7150211	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7156230	0.91[EUR][1000 genomes]
rs751202	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs8021342	1.00[CEU][hapmap]
rs909015	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs925999	1.00[CEU][hapmap];0.89[GIH][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9805891	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];0.88[TSI][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37446200-37465800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:37452200-37457200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:37452200-37457200	Weak transcription	NHLF	lung
4	chr14:37452200-37457600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:37452200-37457600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:37452200-37457800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:37452600-37455600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:37452600-37457200	Weak transcription	NHDF-Ad	bronchial
9	chr14:37452600-37457600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr14:37452600-37457800	Weak transcription	HMEC	breast
11	chr14:37452600-37457800	Weak transcription	NHEK	skin

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