Variant report

Variant	rs17188367
Chromosome Location	chr1:210744289-210744290
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12122837	0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12124286	0.88[JPT][hapmap];0.83[AMR][1000 genomes]
rs12130516	0.84[CEU][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12131405	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12139453	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12142819	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12748330	0.80[ASN][1000 genomes]
rs12754753	0.86[CHB][hapmap];0.81[CHD][hapmap];0.85[AMR][1000 genomes]
rs17188344	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2357920	0.92[CEU][hapmap];0.91[CHD][hapmap];0.88[LWK][hapmap];0.82[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34226838	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34542042	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35415526	0.84[ASN][1000 genomes]
rs4344331	0.86[CHB][hapmap];0.81[CHD][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17188367	C1orf74	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210739400-210753000	Weak transcription	HSMMtube	muscle
2	chr1:210742400-210745200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:210744000-210744800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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