Variant report

Variant	rs17188741
Chromosome Location	chr1:211124020-211124021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210547492..210548995-chr1:211123533..211125722,2	K562	blood:
2	chr1:211123403..211124195-chr1:211307181..211308094,2	MCF-7	breast:
3	chr1:211123370..211124075-chr1:211307428..211308085,3	K562	blood:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction
ENSG00000143473	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10494931	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10494932	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10863870	0.87[AFR][1000 genomes]
rs11119658	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11119664	0.82[ASN][1000 genomes]
rs11485203	0.89[AFR][1000 genomes]
rs11578692	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11579078	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11582440	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11582507	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11583101	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11588573	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12074568	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12121565	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12722738	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12750762	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12751504	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12752336	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12756697	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12760791	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1393026	0.90[AFR][1000 genomes]
rs1393028	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1501558	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501560	0.98[ASN][1000 genomes]
rs17188748	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188797	0.84[ASN][1000 genomes]
rs2134108	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2221250	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs33985151	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34773128	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34827659	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35019263	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4262610	0.82[ASN][1000 genomes]
rs4638187	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59374111	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61850226	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6678283	0.85[AFR][1000 genomes]
rs6683856	0.98[ASN][1000 genomes]
rs6697578	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6702598	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7414286	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7517771	0.90[AFR][1000 genomes]
rs7519090	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7535286	0.89[AFR][1000 genomes]
rs868963	0.82[ASN][1000 genomes]
rs9662051	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211112800-211124800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211123000-211152000	Weak transcription	HSMM	muscle

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