Variant report

Variant	rs17188895
Chromosome Location	chr1:211321345-211321346
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10494931	0.84[JPT][hapmap]
rs10494932	0.84[JPT][hapmap]
rs10863877	0.91[ASN][1000 genomes]
rs11119658	0.84[JPT][hapmap]
rs11119664	0.84[JPT][hapmap]
rs11119694	0.84[ASN][1000 genomes]
rs11119696	0.84[ASN][1000 genomes]
rs11579711	0.93[ASN][1000 genomes]
rs11582507	0.84[JPT][hapmap]
rs11583101	0.84[JPT][hapmap]
rs12406301	0.93[ASN][1000 genomes]
rs12408290	0.84[ASN][1000 genomes]
rs12756697	0.87[JPT][hapmap]
rs12760791	0.84[JPT][hapmap]
rs1338353	0.84[ASN][1000 genomes]
rs1393028	0.84[JPT][hapmap]
rs1501558	0.84[JPT][hapmap]
rs1538287	1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1572646	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs1582137	0.84[ASN][1000 genomes]
rs17017226	1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17188797	0.84[JPT][hapmap]
rs17267400	1.00[AFR][1000 genomes]
rs17267533	0.85[MKK][hapmap]
rs1933524	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2211039	0.84[ASN][1000 genomes]
rs2221250	0.84[JPT][hapmap]
rs3111218	0.84[ASN][1000 genomes]
rs3111220	0.84[ASN][1000 genomes]
rs3111221	0.84[ASN][1000 genomes]
rs3111224	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3111226	0.84[ASN][1000 genomes]
rs3120775	0.84[ASN][1000 genomes]
rs3120776	0.84[ASN][1000 genomes]
rs3120777	0.84[ASN][1000 genomes]
rs3120778	1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3125850	1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3125852	0.84[ASN][1000 genomes]
rs33985151	0.84[JPT][hapmap]
rs3811396	0.93[ASN][1000 genomes]
rs3828021	1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs61848604	0.86[ASN][1000 genomes]
rs61848648	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61848649	1.00[AFR][1000 genomes]
rs6540658	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6540659	0.93[ASN][1000 genomes]
rs6540666	0.84[ASN][1000 genomes]
rs6540667	0.84[ASN][1000 genomes]
rs6540669	0.84[ASN][1000 genomes]
rs6660415	0.80[GIH][hapmap]
rs6669706	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6684075	0.84[ASN][1000 genomes]
rs6697578	0.81[JPT][hapmap]
rs6700303	0.84[ASN][1000 genomes]
rs7516636	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530182	0.84[ASN][1000 genomes]
rs7537388	0.84[GIH][hapmap]
rs867849	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9430056	0.84[ASN][1000 genomes]
rs9430057	0.81[ASN][1000 genomes]
rs9430058	0.84[ASN][1000 genomes]
rs946142	1.00[JPT][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211319600-211321600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr1:211321000-211321600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:211321200-211321600	Enhancers	HUES64 Cell Line	embryonic stem cell

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