Variant report

Variant	rs17209651
Chromosome Location	chr8:64128971-64128972
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10086139	0.86[ASN][1000 genomes]
rs10102076	0.81[EUR][1000 genomes]
rs10106324	1.00[CHB][hapmap]
rs10110180	0.81[EUR][1000 genomes]
rs10283333	0.86[ASN][1000 genomes]
rs11988945	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12335094	1.00[CHB][hapmap]
rs12708014	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13266641	0.86[ASN][1000 genomes]
rs13280015	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1369455	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1435459	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2043525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217828	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28540594	0.86[ASN][1000 genomes]
rs34402366	0.81[EUR][1000 genomes]
rs3924926	0.81[EUR][1000 genomes]
rs4446729	1.00[CHB][hapmap]
rs6991201	0.86[ASN][1000 genomes]
rs6998134	1.00[CHB][hapmap]
rs7003413	1.00[CHB][hapmap]
rs7010484	1.00[CHB][hapmap]
rs7016325	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7016339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7465150	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64101600-64136000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:64103600-64129800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:64107000-64132000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:64108600-64132000	Weak transcription	Lung	lung
5	chr8:64108600-64134000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:64109000-64132000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:64113200-64132600	Weak transcription	Aorta	Aorta
8	chr8:64113600-64132600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:64113800-64131800	Weak transcription	Hela-S3	cervix
10	chr8:64114000-64130800	Weak transcription	NHEK	skin
11	chr8:64114600-64129200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr8:64114600-64131400	Weak transcription	HSMMtube	muscle
13	chr8:64115000-64129000	Weak transcription	Fetal Heart	heart
14	chr8:64117800-64131800	Weak transcription	NHLF	lung
15	chr8:64117800-64133200	Weak transcription	Fetal Stomach	stomach
16	chr8:64118400-64132600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr8:64118400-64133000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:64118800-64132000	Weak transcription	Small Intestine	intestine
19	chr8:64119000-64132000	Weak transcription	Ovary	ovary
20	chr8:64119000-64132000	Weak transcription	Pancreas	Pancrea
21	chr8:64119000-64132000	Weak transcription	Right Atrium	heart
22	chr8:64119000-64132000	Weak transcription	Spleen	Spleen
23	chr8:64119200-64132600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr8:64119600-64132800	Weak transcription	Colon Smooth Muscle	Colon
25	chr8:64119600-64138800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr8:64119800-64129200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr8:64120400-64132000	Weak transcription	Adipose Nuclei	Adipose
28	chr8:64120600-64129600	Weak transcription	Brain Anterior Caudate	brain
29	chr8:64120600-64130200	Strong transcription	HSMM	muscle
30	chr8:64121200-64129200	Weak transcription	Brain Hippocampus Middle	brain
31	chr8:64121200-64129800	Weak transcription	Brain Substantia Nigra	brain
32	chr8:64121200-64132000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:64121600-64130600	Weak transcription	Left Ventricle	heart
34	chr8:64121600-64131800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr8:64121600-64132600	Weak transcription	Psoas Muscle	Psoas
36	chr8:64122000-64132600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr8:64122600-64132000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr8:64122600-64138600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr8:64122800-64131600	Weak transcription	NH-A	brain
40	chr8:64122800-64135000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr8:64122800-64135000	Weak transcription	GM12878-XiMat	blood
42	chr8:64122800-64135200	Weak transcription	Fetal Kidney	kidney
43	chr8:64123000-64132000	Weak transcription	Fetal Lung	lung
44	chr8:64123000-64132600	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr8:64123000-64132600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr8:64123000-64138200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr8:64123200-64129000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr8:64123200-64130800	Weak transcription	A549	lung
49	chr8:64123200-64130800	Weak transcription	HUVEC	blood vessel
50	chr8:64123200-64132200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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