Variant report

Variant	rs1723502
Chromosome Location	chr6:64071289-64071290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1010057	0.90[EUR][1000 genomes]
rs1320419	0.90[EUR][1000 genomes]
rs1404779	0.90[EUR][1000 genomes]
rs1464865	0.90[EUR][1000 genomes]
rs1464866	0.86[EUR][1000 genomes]
rs1525354	0.90[EUR][1000 genomes]
rs1525355	0.90[EUR][1000 genomes]
rs1525357	0.90[EUR][1000 genomes]
rs1619321	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1621804	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1625205	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1628449	0.86[EUR][1000 genomes]
rs1711897	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711898	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711899	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711900	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711901	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711902	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711903	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711904	0.90[EUR][1000 genomes]
rs1711906	0.90[EUR][1000 genomes]
rs1711912	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711913	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711914	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711915	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1711918	0.90[EUR][1000 genomes]
rs1711927	0.90[EUR][1000 genomes]
rs1711928	0.90[EUR][1000 genomes]
rs1723497	0.90[EUR][1000 genomes]
rs1723498	0.90[EUR][1000 genomes]
rs1723499	0.90[EUR][1000 genomes]
rs1723500	0.90[EUR][1000 genomes]
rs1723503	0.90[EUR][1000 genomes]
rs1723504	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1723506	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1723507	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1723508	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1723528	0.82[EUR][1000 genomes]
rs1723531	0.90[EUR][1000 genomes]
rs1741780	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1741782	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741783	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741784	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1741786	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1741787	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1741788	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1741789	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1741790	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1741799	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1741805	0.90[EUR][1000 genomes]
rs1741810	0.90[EUR][1000 genomes]
rs1741813	0.90[EUR][1000 genomes]
rs1779753	0.90[EUR][1000 genomes]
rs1779755	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1779756	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1779757	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1779758	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1779760	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779761	0.87[AMR][1000 genomes]
rs1779762	0.92[AMR][1000 genomes]
rs1936532	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2005098	0.90[EUR][1000 genomes]
rs2474905	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2474908	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677021	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2677022	0.90[EUR][1000 genomes]
rs2677023	0.90[EUR][1000 genomes]
rs2677024	0.82[EUR][1000 genomes]
rs2677026	0.90[EUR][1000 genomes]
rs2677027	0.90[EUR][1000 genomes]
rs2677028	0.90[EUR][1000 genomes]
rs2677029	0.90[EUR][1000 genomes]
rs2753069	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753070	0.90[EUR][1000 genomes]
rs2753071	0.90[EUR][1000 genomes]
rs2753072	0.90[EUR][1000 genomes]
rs2753073	0.90[EUR][1000 genomes]
rs2753074	0.90[EUR][1000 genomes]
rs2800031	0.90[EUR][1000 genomes]
rs2800034	0.90[EUR][1000 genomes]
rs2800035	0.90[EUR][1000 genomes]
rs2800036	0.90[EUR][1000 genomes]
rs4710426	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4710427	0.96[AMR][1000 genomes]
rs482904	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58623141	1.00[AMR][1000 genomes]
rs59943612	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60505637	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61229307	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6454169	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933112	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732948	0.90[EUR][1000 genomes]
rs7381742	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7382020	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739266	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7750785	0.90[EUR][1000 genomes]
rs7752941	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7757686	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758841	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771677	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824372	0.86[ASN][1000 genomes]
rs824373	0.90[EUR][1000 genomes]
rs824374	0.90[EUR][1000 genomes]
rs824375	0.90[EUR][1000 genomes]
rs824376	0.90[EUR][1000 genomes]
rs824377	0.90[EUR][1000 genomes]
rs824378	0.90[EUR][1000 genomes]
rs824379	0.90[EUR][1000 genomes]
rs824380	0.90[EUR][1000 genomes]
rs824381	0.90[EUR][1000 genomes]
rs824383	0.90[EUR][1000 genomes]
rs824385	0.90[EUR][1000 genomes]
rs824387	0.90[EUR][1000 genomes]
rs824390	0.90[EUR][1000 genomes]
rs824391	0.90[EUR][1000 genomes]
rs824392	0.90[EUR][1000 genomes]
rs824393	0.90[EUR][1000 genomes]
rs824394	0.90[EUR][1000 genomes]
rs860349	0.90[EUR][1000 genomes]
rs861113	0.90[EUR][1000 genomes]
rs865415	0.90[EUR][1000 genomes]
rs865416	0.90[EUR][1000 genomes]
rs940741	0.90[EUR][1000 genomes]
rs9767041	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1031548	chr6:64026862-64102045	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030651	chr6:64028392-64102045	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3400742	chr6:64068993-64073191	Weak transcription ZNF genes & repeats Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
6	esv3423105	chr6:64070493-64074791	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64066000-64071400	Weak transcription	A549	lung
2	chr6:64066000-64071600	Weak transcription	HepG2	liver
3	chr6:64071200-64072000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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