Variant report

Variant	rs17235334
Chromosome Location	chr13:96274900-96274901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3742151	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759446	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7321311	0.90[ASN][1000 genomes]
rs9556493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561918	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561919	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9561920	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9561921	0.92[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9561922	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr13:96246400-96278600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr13:96247800-96293600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:96248000-96276600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:96251400-96294400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:96256400-96295200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:96256800-96294200	Weak transcription	Placenta	Placenta
8	chr13:96260000-96277000	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr13:96260200-96279000	Weak transcription	Liver	Liver
10	chr13:96260200-96293400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr13:96260600-96279200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:96260800-96277000	Strong transcription	Fetal Muscle Trunk	muscle
13	chr13:96261000-96277000	Strong transcription	Fetal Stomach	stomach
14	chr13:96261000-96277200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr13:96261200-96288400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr13:96262000-96280800	Weak transcription	Fetal Heart	heart
17	chr13:96262200-96277000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr13:96262600-96275600	Strong transcription	Fetal Brain Female	brain
19	chr13:96262800-96278000	Strong transcription	HSMM	muscle
20	chr13:96263200-96277000	Strong transcription	Stomach Smooth Muscle	stomach
21	chr13:96263600-96290000	Weak transcription	Adipose Nuclei	Adipose
22	chr13:96264800-96276200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr13:96265800-96293400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr13:96266400-96277200	Strong transcription	HUVEC	blood vessel
25	chr13:96266400-96286000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr13:96267400-96277400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr13:96267600-96293000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr13:96267800-96275800	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr13:96267800-96278000	Strong transcription	NH-A	brain
30	chr13:96268000-96276200	Strong transcription	HepG2	liver
31	chr13:96268000-96279400	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr13:96268200-96275800	Strong transcription	NHDF-Ad	bronchial
33	chr13:96268400-96275800	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr13:96268400-96286400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr13:96268400-96291600	Strong transcription	Osteobl	bone
36	chr13:96268800-96281400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr13:96270000-96275800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr13:96270000-96277000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr13:96270200-96275800	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr13:96270200-96276200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr13:96270200-96276200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr13:96270200-96277400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr13:96270200-96277400	Strong transcription	HMEC	breast
44	chr13:96270200-96293400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr13:96270600-96280200	Weak transcription	Aorta	Aorta
46	chr13:96271400-96277000	Strong transcription	Ovary	ovary
47	chr13:96271600-96275800	Strong transcription	Brain Germinal Matrix	brain
48	chr13:96271600-96284800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr13:96272200-96276000	Strong transcription	A549	lung
50	chr13:96272200-96277000	Strong transcription	Colon Smooth Muscle	Colon

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