Variant report

Variant	rs17236749
Chromosome Location	chr15:34431780-34431781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34427280..34431137-chr15:34431263..34436776,5	K562	blood:
2	chr15:34430630..34433436-chr15:34437800..34440377,2	K562	blood:

Variant related genes	Relation type
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10152261	0.88[ASN][1000 genomes]
rs10519916	0.86[MEX][hapmap]
rs11638909	0.86[MEX][hapmap]
rs11852315	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11853345	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11853347	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854298	0.82[ASN][1000 genomes]
rs11856753	0.82[ASN][1000 genomes]
rs11857604	0.82[ASN][1000 genomes]
rs11857608	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11858527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236770	0.86[MEX][hapmap]
rs17554484	0.88[ASN][1000 genomes]
rs17817770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118159	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118160	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406544	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3764236	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3829483	0.88[ASN][1000 genomes]
rs41405647	1.00[CHB][hapmap];0.86[GIH][hapmap];0.84[TSI][hapmap];0.88[ASN][1000 genomes]
rs4486849	0.88[ASN][1000 genomes]
rs4581678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55801303	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495624	0.88[ASN][1000 genomes]
rs7161944	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168139	1.00[ASN][1000 genomes]
rs7176526	0.82[ASN][1000 genomes]
rs7179249	0.82[ASN][1000 genomes]
rs7183568	0.82[ASN][1000 genomes]
rs73382081	0.82[ASN][1000 genomes]
rs73382086	0.82[ASN][1000 genomes]
rs73384011	0.88[ASN][1000 genomes]
rs7497666	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8037674	0.88[ASN][1000 genomes]
rs9672345	0.82[ASN][1000 genomes]
rs9672434	0.82[ASN][1000 genomes]
rs9672496	0.82[ASN][1000 genomes]
rs9672544	0.94[CEU][hapmap]
rs9806468	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34415400-34434600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:34415600-34432800	Weak transcription	Osteobl	bone
3	chr15:34415800-34432800	Weak transcription	NHDF-Ad	bronchial
4	chr15:34416200-34439200	Weak transcription	HUVEC	blood vessel
5	chr15:34417600-34439400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:34417800-34436800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:34419400-34434800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:34419400-34441800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:34423600-34434600	Weak transcription	Left Ventricle	heart
10	chr15:34424400-34446400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:34424800-34432400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr15:34425200-34432400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:34425400-34438200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:34425800-34432200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr15:34425800-34439800	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:34426200-34431800	Weak transcription	Fetal Intestine Large	intestine
17	chr15:34426400-34434600	Weak transcription	Right Ventricle	heart
18	chr15:34427400-34435400	Weak transcription	Fetal Stomach	stomach
19	chr15:34427600-34437000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:34427800-34431800	Weak transcription	NHLF	lung
21	chr15:34427800-34432000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr15:34427800-34434600	Weak transcription	NHEK	skin
23	chr15:34427800-34446400	Weak transcription	Psoas Muscle	Psoas
24	chr15:34428000-34434800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:34428000-34438400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:34428000-34441800	Weak transcription	Esophagus	oesophagus
27	chr15:34428200-34435400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:34428400-34432600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr15:34428400-34439800	Weak transcription	Thymus	Thymus
30	chr15:34428600-34432800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr15:34428800-34442400	Weak transcription	Colon Smooth Muscle	Colon
32	chr15:34429000-34442400	Weak transcription	Aorta	Aorta
33	chr15:34429000-34444400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:34429200-34434600	Weak transcription	Brain Germinal Matrix	brain
35	chr15:34429200-34446200	Strong transcription	Placenta	Placenta
36	chr15:34429400-34433000	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr15:34429400-34439600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:34429400-34439600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:34429400-34445400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:34429400-34445600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:34429400-34445800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:34429600-34433000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:34429600-34434600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:34429600-34438200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr15:34429600-34444800	Strong transcription	Adipose Nuclei	Adipose
46	chr15:34429600-34446400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr15:34429800-34432600	Weak transcription	Primary B cells from cord blood	blood
48	chr15:34429800-34433600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:34429800-34446400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:34429800-34456800	Weak transcription	Brain Inferior Temporal Lobe	brain

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