Variant report

Variant	rs17253695
Chromosome Location	chr14:55574610-55574611
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55574274..55575909-chr14:55583164..55584715,2	K562	blood:
2	chr14:55568677..55571661-chr14:55571922..55577835,5	K562	blood:
3	chr14:55573704..55575729-chr14:55607371..55609578,2	MCF-7	breast:
4	chr14:55567648..55572808-chr14:55572945..55577245,19	MCF-7	breast:
5	chr14:55493296..55494943-chr14:55572481..55574977,2	K562	blood:
6	chr14:55574420..55575139-chr14:55595978..55596776,3	Hela-S3	cervix:
7	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
8	chr14:55573563..55575807-chr14:55587577..55589248,2	K562	blood:
9	chr14:55572892..55577828-chr14:55580219..55584664,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000180008	Chromatin interaction
ENSG00000198554	Chromatin interaction
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10137409	0.82[ASN][1000 genomes]
rs10140857	0.87[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10146637	0.88[CEU][hapmap];0.94[TSI][hapmap]
rs10149435	0.83[ASN][1000 genomes]
rs1047556	0.86[ASN][1000 genomes]
rs11158034	0.88[CEU][hapmap]
rs11621351	0.82[ASN][1000 genomes]
rs11622636	0.96[CEU][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11622740	0.93[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs15870	0.82[ASN][1000 genomes]
rs17253702	0.82[JPT][hapmap]
rs17672058	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17672364	0.96[CEU][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap]
rs17832359	0.82[ASN][1000 genomes]
rs1815316	0.82[ASN][1000 genomes]
rs2075603	0.87[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2094436	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2147970	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2147972	0.86[ASN][1000 genomes]
rs2182207	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2274273	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs2296489	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2340936	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2880103	0.84[CEU][hapmap];0.94[TSI][hapmap]
rs3742566	0.87[ASN][1000 genomes]
rs3759667	0.88[CEU][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3825613	0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3825614	0.92[CEU][hapmap]
rs4525413	0.88[EUR][1000 genomes]
rs4644	0.87[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs55710823	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57033289	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57970196	0.86[ASN][1000 genomes]
rs58553156	0.98[EUR][1000 genomes]
rs66476033	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66531545	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66782529	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66842809	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66871576	0.81[ASN][1000 genomes]
rs67008693	0.81[EUR][1000 genomes]
rs67092614	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67098772	0.86[ASN][1000 genomes]
rs67215571	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67395212	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67416413	0.81[EUR][1000 genomes]
rs67588230	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67756714	0.87[ASN][1000 genomes]
rs67805055	0.86[ASN][1000 genomes]
rs67958555	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68083077	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7140872	0.82[ASN][1000 genomes]
rs7159824	0.88[CEU][hapmap];0.94[TSI][hapmap]
rs7493394	0.83[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17253695	FBXO34	cis	cerebellum	SCAN
rs17253695	ATG14	cis	parietal	SCAN

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55568600-55576000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr14:55568600-55576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:55569200-55574800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:55569200-55574800	Weak transcription	Gastric	stomach
5	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
6	chr14:55570400-55575800	Enhancers	Fetal Intestine Small	intestine
7	chr14:55571000-55574800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:55571000-55574800	Weak transcription	Psoas Muscle	Psoas
9	chr14:55571200-55575000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:55571600-55574800	Weak transcription	Esophagus	oesophagus
11	chr14:55572400-55575800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr14:55572600-55574800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:55572600-55575200	Enhancers	Colon Smooth Muscle	Colon
14	chr14:55572800-55575600	Enhancers	Ovary	ovary
15	chr14:55573200-55574800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr14:55573200-55575600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:55573600-55575000	Enhancers	Small Intestine	intestine
18	chr14:55573600-55575200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr14:55573600-55575200	Enhancers	Spleen	Spleen
20	chr14:55573600-55575400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr14:55573800-55574800	Enhancers	Primary hematopoietic stem cells	blood
22	chr14:55573800-55574800	Enhancers	HMEC	breast
23	chr14:55573800-55575400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr14:55573800-55575600	Enhancers	Stomach Mucosa	stomach
25	chr14:55573800-55576400	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr14:55574000-55574800	Weak transcription	Left Ventricle	heart
27	chr14:55574000-55574800	Enhancers	K562	blood
28	chr14:55574000-55575000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr14:55574000-55575200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:55574000-55575200	Enhancers	Fetal Heart	heart
31	chr14:55574000-55575200	Enhancers	Right Atrium	heart
32	chr14:55574000-55575400	Enhancers	HUVEC	blood vessel
33	chr14:55574000-55575600	Enhancers	Fetal Muscle Trunk	muscle
34	chr14:55574000-55575800	Enhancers	Fetal Muscle Leg	muscle
35	chr14:55574200-55574800	Enhancers	Rectal Smooth Muscle	rectum
36	chr14:55574200-55575000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:55574200-55575000	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr14:55574200-55575000	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr14:55574200-55575000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr14:55574200-55575200	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr14:55574200-55575200	Enhancers	H9 Cell Line	embryonic stem cell
42	chr14:55574200-55575200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr14:55574200-55575200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:55574200-55575200	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr14:55574200-55575200	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr14:55574200-55575200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr14:55574200-55575200	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr14:55574200-55575200	Enhancers	Colonic Mucosa	Colon
49	chr14:55574200-55575200	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr14:55574200-55575200	Enhancers	Right Ventricle	heart

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