The 2.0 version of rSNPBase

Variant report

Variant rs17271666
Chromosome Location chr1:93320593-93320594
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93304400-93349000 Weak transcription Aorta Aorta
2 chr1:93306800-93324800 Weak transcription Pancreas Pancrea
3 chr1:93307000-93324800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr1:93308000-93323400 Weak transcription Small Intestine intestine
5 chr1:93308000-93324600 Weak transcription Psoas Muscle Psoas
6 chr1:93309400-93324800 Weak transcription NHDF-Ad bronchial
7 chr1:93309600-93324800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr1:93309800-93324200 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr1:93309800-93324400 Weak transcription A549 lung
10 chr1:93309800-93324400 Weak transcription Osteobl bone
11 chr1:93309800-93342400 Weak transcription NHLF lung
12 chr1:93310000-93324200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr1:93310000-93324200 Weak transcription Brain Substantia Nigra brain
14 chr1:93310000-93324800 Weak transcription HSMMtube muscle
15 chr1:93310200-93323600 Weak transcription HepG2 liver
16 chr1:93310200-93324600 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr1:93310400-93324200 Weak transcription Fetal Thymus thymus
18 chr1:93310400-93324400 Weak transcription Stomach Smooth Muscle stomach
19 chr1:93310400-93324800 Weak transcription Left Ventricle heart
20 chr1:93311000-93323200 Weak transcription Liver Liver
21 chr1:93311600-93324200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr1:93312200-93320800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr1:93313600-93324200 Weak transcription Brain Cingulate Gyrus brain
24 chr1:93314400-93338000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:93316000-93342800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr1:93316200-93322800 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr1:93316200-93324200 Weak transcription Thymus Thymus
28 chr1:93316200-93324400 Weak transcription Primary T regulatory cells fromperipheralblood blood
29 chr1:93316200-93324800 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr1:93316200-93338200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr1:93316200-93338400 Weak transcription Fetal Stomach stomach
32 chr1:93316600-93324200 Weak transcription Primary T helper naive cells from peripheral blood blood
33 chr1:93316600-93324200 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr1:93316800-93323400 Weak transcription Primary T helper cells fromperipheralblood blood
35 chr1:93316800-93324600 Weak transcription Colon Smooth Muscle Colon
36 chr1:93317200-93320600 Enhancers Primary monocytes fromperipheralblood blood
37 chr1:93317400-93324600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr1:93317600-93320600 Enhancers Primary neutrophils fromperipheralblood blood
39 chr1:93318200-93324600 Weak transcription NHEK skin
40 chr1:93318400-93320800 Weak transcription Primary T cells fromperipheralblood blood
41 chr1:93318400-93323800 Weak transcription Dnd41 blood
42 chr1:93318600-93324200 Weak transcription Primary T helper naive cells fromperipheralblood blood
43 chr1:93318600-93324200 Weak transcription Brain Anterior Caudate brain
44 chr1:93318600-93338200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
45 chr1:93319000-93323800 Weak transcription Primary T cells from cord blood blood
46 chr1:93319200-93321600 Enhancers Placenta Placenta
47 chr1:93319200-93324200 Weak transcription Brain Inferior Temporal Lobe brain
48 chr1:93319400-93327800 Weak transcription Primary B cells from cord blood blood
49 chr1:93320000-93320600 Enhancers GM12878-XiMat blood
50 chr1:93320200-93320600 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015