Variant report

Variant	rs17284624
Chromosome Location	chr12:86507746-86507747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10506927	0.84[CEU][hapmap]
rs10506928	0.92[CEU][hapmap]
rs10506931	0.84[CEU][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap]
rs10779233	0.84[CEU][hapmap]
rs10863156	1.00[CHD][hapmap]
rs10863163	0.84[CEU][hapmap]
rs12298174	0.84[CEU][hapmap]
rs12313444	0.84[CEU][hapmap]
rs12321159	0.84[CEU][hapmap]
rs1389296	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs1552840	0.83[CEU][hapmap]
rs17284129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17284484	0.92[CEU][hapmap]
rs17284820	0.92[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17357025	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17357233	0.84[CEU][hapmap]
rs17357259	0.80[CEU][hapmap]
rs17357469	0.83[CEU][hapmap]
rs4586245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4842454	0.80[CEU][hapmap]
rs4842541	0.92[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4842558	0.81[CEU][hapmap]
rs55886852	0.82[AMR][1000 genomes]
rs56154427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58024273	0.80[EUR][1000 genomes]
rs61931146	0.81[EUR][1000 genomes]
rs61931157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61932264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61932265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61932266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61932268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61932269	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61932270	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61932271	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61932272	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61932274	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61932275	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61948967	0.82[AMR][1000 genomes]
rs61949011	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61949013	1.00[AFR][1000 genomes]
rs61949037	1.00[AFR][1000 genomes]
rs61949038	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61949039	1.00[AFR][1000 genomes]
rs61949041	1.00[AFR][1000 genomes]
rs7136697	0.84[CEU][hapmap]
rs7486522	0.84[CEU][hapmap]
rs7487426	0.91[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3345033	chr12:86458294-86514745	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv470311	chr12:86484366-86550783	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86506800-86507800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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