Variant report

Variant	rs17289938
Chromosome Location	chr12:86813099-86813100
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10506934	0.88[CEU][hapmap]
rs10506935	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11830208	0.85[CEU][hapmap]
rs12304593	0.82[AMR][1000 genomes]
rs12305255	0.81[CEU][hapmap]
rs12307279	0.85[CEU][hapmap]
rs12315617	0.87[CEU][hapmap]
rs12316480	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs17288772	0.85[AMR][1000 genomes]
rs17288800	0.81[CEU][hapmap]
rs17289052	0.88[CEU][hapmap];0.90[AMR][1000 genomes]
rs17289087	0.85[CEU][hapmap]
rs17289115	0.85[CEU][hapmap]
rs17289150	0.85[CEU][hapmap]
rs17289178	0.88[CEU][hapmap]
rs17289646	0.85[CEU][hapmap]
rs17359446	0.87[CEU][hapmap]
rs17367374	0.88[CEU][hapmap];0.90[AMR][1000 genomes]
rs17367869	0.88[CEU][hapmap];0.97[AMR][1000 genomes]
rs17367946	0.85[CEU][hapmap]
rs17369073	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1922743	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2405794	1.00[CEU][hapmap]
rs2405795	1.00[CEU][hapmap]
rs2406157	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2406158	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4842487	0.84[CEU][hapmap]
rs4842640	0.88[CEU][hapmap]
rs5022626	0.92[CEU][hapmap]
rs55649116	0.82[AMR][1000 genomes]
rs55733909	0.82[AMR][1000 genomes]
rs55820226	0.82[AMR][1000 genomes]
rs55870715	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55904324	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60436792	0.95[AMR][1000 genomes]
rs61133374	0.95[AMR][1000 genomes]
rs61949475	0.95[AMR][1000 genomes]
rs61949482	0.97[AMR][1000 genomes]
rs61949483	0.92[AMR][1000 genomes]
rs61949532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61949533	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61949558	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61949559	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61950711	0.85[AMR][1000 genomes]
rs61950712	0.82[AMR][1000 genomes]
rs61950713	0.85[AMR][1000 genomes]
rs61950746	0.92[AMR][1000 genomes]
rs61950747	0.92[AMR][1000 genomes]
rs61950748	0.92[AMR][1000 genomes]
rs61950749	0.92[AMR][1000 genomes]
rs61950760	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61950761	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61950762	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61950763	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61950764	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61950771	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61950775	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61950780	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61950781	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73189394	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73189397	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73191472	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73191477	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73191482	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73191485	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73191486	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9705580	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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