Variant report

Variant	rs17295786
Chromosome Location	chr11:10278837-10278838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs12279871	0.91[CEU][hapmap]
rs1372810	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1450265	1.00[CEU][hapmap]
rs1450266	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1450268	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1450275	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1450276	0.91[CEU][hapmap]
rs1470258	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs16907654	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17292774	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17294609	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17294693	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17296211	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17296765	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17358721	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17358882	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17359382	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17360118	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2044142	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2403269	0.89[ASN][1000 genomes]
rs2920148	0.89[ASN][1000 genomes]
rs2920149	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920150	0.88[YRI][hapmap]
rs2920151	0.87[YRI][hapmap]
rs2920153	0.89[ASN][1000 genomes]
rs2957652	0.89[ASN][1000 genomes]
rs2957657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34596876	0.89[ASN][1000 genomes]
rs4077089	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4403799	0.82[EUR][1000 genomes]
rs59060963	0.89[ASN][1000 genomes]
rs61877054	0.86[EUR][1000 genomes]
rs61877263	0.86[EUR][1000 genomes]
rs61877264	0.87[EUR][1000 genomes]
rs61878635	0.85[EUR][1000 genomes]
rs61878652	0.85[EUR][1000 genomes]
rs61878654	0.85[EUR][1000 genomes]
rs61878655	0.84[EUR][1000 genomes]
rs61878657	0.85[EUR][1000 genomes]
rs61878658	0.85[EUR][1000 genomes]
rs61878659	0.84[EUR][1000 genomes]
rs61880160	0.85[EUR][1000 genomes]
rs61889783	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889785	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889795	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61889796	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61889802	0.99[EUR][1000 genomes]
rs61889815	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889816	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889817	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61889836	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61889840	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61889842	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61889843	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61889845	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61889846	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61889847	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61889956	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61889957	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61891764	0.81[EUR][1000 genomes]
rs61891767	0.81[EUR][1000 genomes]
rs61891768	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61891770	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61891771	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61891773	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61891775	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61891776	0.80[EUR][1000 genomes]
rs61892569	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61892570	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61892572	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61892573	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61892575	0.95[EUR][1000 genomes]
rs61892593	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61892594	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61892595	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61892596	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61892597	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6484142	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103637	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104591	0.87[EUR][1000 genomes]
rs7105355	0.85[EUR][1000 genomes]
rs7107373	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7108385	1.00[CEU][hapmap]
rs7109096	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7111544	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7111647	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7123467	0.82[EUR][1000 genomes]
rs7123541	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7125823	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7129220	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7131546	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs72850458	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72851648	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72851670	0.81[EUR][1000 genomes]
rs72858902	0.84[EUR][1000 genomes]
rs72861738	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72861762	0.94[EUR][1000 genomes]
rs72861767	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72861799	0.97[EUR][1000 genomes]
rs7929332	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7930218	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933724	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7935257	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7939096	0.84[EUR][1000 genomes]
rs7941557	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7945990	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7947210	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949974	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs896043	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10255600-10279000	Weak transcription	Small Intestine	intestine
2	chr11:10259200-10280200	Weak transcription	A549	lung
3	chr11:10263600-10280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:10263800-10280200	Weak transcription	Ovary	ovary
5	chr11:10264600-10280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:10264600-10280800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:10264800-10282800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
9	chr11:10269800-10283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:10273600-10280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:10273800-10280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:10277400-10279800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:10277400-10281200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr11:10277600-10279200	Weak transcription	Left Ventricle	heart
15	chr11:10277600-10279800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:10277600-10280800	Weak transcription	NHLF	lung
17	chr11:10277600-10283000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:10277600-10283000	Weak transcription	HUVEC	blood vessel
19	chr11:10277600-10292000	Weak transcription	Aorta	Aorta
20	chr11:10278000-10279000	Enhancers	NHDF-Ad	bronchial
21	chr11:10278000-10282800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:10278000-10283200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:10278200-10283000	Weak transcription	HSMM	muscle
24	chr11:10278200-10295200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:10278400-10279000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr11:10278600-10279000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:10278600-10280600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:10278800-10279200	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr11:10278800-10279400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr11:10278800-10279400	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr11:10278800-10279600	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr11:10278800-10279800	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:10278800-10283000	Weak transcription	Osteobl	bone

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