Variant report

Variant	rs1731770
Chromosome Location	chr12:67958159-67958160
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12301392	1.00[AMR][1000 genomes]
rs12301453	1.00[AMR][1000 genomes]
rs12315232	1.00[AMR][1000 genomes]
rs17104136	1.00[AMR][1000 genomes]
rs2700056	1.00[AMR][1000 genomes]
rs2700061	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2700063	1.00[AMR][1000 genomes]
rs35314758	1.00[AMR][1000 genomes]
rs6581762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7298233	1.00[AMR][1000 genomes]
rs7956219	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9652023	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040339	chr12:67925018-67963239	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3430007	chr12:67947726-68241938	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67950200-67960000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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