Variant report

Variant	rs173201
Chromosome Location	chr4:86887860-86887861
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11724681	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs168308	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs182961	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164535	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2164536	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2164537	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2575680	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2589504	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2589509	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2665877	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346467	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs346471	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs346475	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs346478	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs346480	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346484	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346485	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs346488	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346492	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346502	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs346503	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs346504	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs346505	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs346506	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs346507	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35158998	0.82[AMR][1000 genomes]
rs6851229	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958860	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs958861	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86854000-86893000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr4:86854200-86893000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86854200-86915800	Weak transcription	Left Ventricle	heart
4	chr4:86863600-86902000	Weak transcription	Pancreas	Pancrea
5	chr4:86875000-86891200	Weak transcription	Right Atrium	heart
6	chr4:86875200-86889000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:86875200-86889000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:86875200-86890800	Weak transcription	Stomach Mucosa	stomach
9	chr4:86875200-86915800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:86875400-86888200	Weak transcription	HSMMtube	muscle
11	chr4:86875800-86888600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr4:86875800-86888600	Weak transcription	HSMM	muscle
13	chr4:86878000-86893200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr4:86880600-86915800	Weak transcription	Gastric	stomach
15	chr4:86882000-86892000	Enhancers	NHDF-Ad	bronchial
16	chr4:86884600-86889200	Weak transcription	NHLF	lung
17	chr4:86885000-86915600	Weak transcription	Fetal Lung	lung
18	chr4:86885600-86888600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:86885600-86891800	Enhancers	HUVEC	blood vessel
20	chr4:86886200-86889000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr4:86886800-86888400	Enhancers	Adipose Nuclei	Adipose
22	chr4:86886800-86893000	Weak transcription	Primary B cells from cord blood	blood
23	chr4:86887000-86888800	Enhancers	Colon Smooth Muscle	Colon
24	chr4:86887000-86889600	Enhancers	Fetal Kidney	kidney
25	chr4:86887000-86893200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr4:86887200-86888000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:86887200-86888200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:86887400-86888000	Enhancers	Osteobl	bone
29	chr4:86887400-86889600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr4:86887400-86892000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:86887600-86888800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:86887600-86889400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:86887600-86891200	Weak transcription	Spleen	Spleen
34	chr4:86887600-86893000	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:86887600-86915600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr4:86887800-86888200	Enhancers	Rectal Smooth Muscle	rectum
37	chr4:86887800-86889000	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links