Variant report
| Variant | rs17327726 |
|---|---|
| Chromosome Location | chr7:147369124-147369125 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C7orf33-1 | chr7:147368803-147369225 | ENSG00000230190.1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1525254 | 0.93[EUR][1000 genomes] |
| rs17170638 | 0.86[AFR][1000 genomes] |
| rs17170640 | 1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4310124 | 0.93[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4383899 | 1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4455752 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs56339188 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs58044035 | 0.98[EUR][1000 genomes] |
| rs60448751 | 0.98[EUR][1000 genomes] |
| rs6948030 | 1.00[CEU][hapmap] |
| rs6964327 | 1.00[CEU][hapmap] |
| rs731565 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73741217 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73741883 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7779521 | 0.84[AFR][1000 genomes] |
| rs7779787 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7786677 | 1.00[CEU][hapmap] |
| rs7799323 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7803219 | 0.86[AFR][1000 genomes] |
| rs851726 | 0.81[EUR][1000 genomes] |
| rs851727 | 0.81[EUR][1000 genomes] |
| rs971439 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs971440 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:147369000-147369200 | Enhancers | Brain Substantia Nigra | brain |
