Variant report

Variant	rs17333276
Chromosome Location	chr2:77088825-77088826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11901979	0.85[CEU][hapmap]
rs1319244	0.86[CEU][hapmap];0.82[CHB][hapmap]
rs1446721	0.82[CHB][hapmap]
rs1517775	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17333213	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17333303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17333383	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17333404	0.86[CEU][hapmap];0.82[CHB][hapmap]
rs17333578	0.80[AMR][1000 genomes]
rs17333884	0.82[CHB][hapmap]
rs17333926	0.82[CHB][hapmap];1.00[AFR][1000 genomes]
rs17404969	0.82[JPT][hapmap]
rs17405004	0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs17405288	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17405433	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs17405440	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs17405711	0.82[CHB][hapmap]
rs17405724	0.82[CHB][hapmap];1.00[AFR][1000 genomes]
rs17405864	0.82[CHB][hapmap];1.00[AFR][1000 genomes]
rs1929443	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1929444	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1929454	0.86[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes]
rs1929455	0.86[CEU][hapmap];0.82[CHB][hapmap]
rs1929457	0.86[CEU][hapmap];0.82[CHB][hapmap]
rs4853281	0.81[CEU][hapmap]
rs56161148	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58061039	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62170328	0.81[AMR][1000 genomes]
rs62170331	0.80[AMR][1000 genomes]
rs62170336	1.00[AFR][1000 genomes]
rs62170339	1.00[AFR][1000 genomes]
rs62173102	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62173103	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62173104	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62173110	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6715191	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6715833	0.84[CHB][hapmap]
rs6759073	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs72819216	0.82[AMR][1000 genomes]
rs72819250	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72823112	1.00[AFR][1000 genomes]
rs7425906	0.84[CEU][hapmap];0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv874321	chr2:77031247-77113949	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv874323	chr2:77048896-77113949	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv874325	chr2:77053916-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv458274	chr2:77055883-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv582250	chr2:77055883-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv874326	chr2:77055883-77148261	Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv582251	chr2:77055883-77154515	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77088600-77089200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:77088600-77089800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:77088800-77089200	Enhancers	Dnd41	blood
4	chr2:77088800-77089600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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