Variant report

Variant	rs17345486
Chromosome Location	chr5:116988675-116988676
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10036337	0.93[ASN][1000 genomes]
rs10043080	1.00[CHB][hapmap]
rs10054930	1.00[ASN][1000 genomes]
rs10060241	0.93[ASN][1000 genomes]
rs10060250	0.93[ASN][1000 genomes]
rs10071854	1.00[ASN][1000 genomes]
rs10074010	1.00[ASN][1000 genomes]
rs10080163	0.93[ASN][1000 genomes]
rs12109171	1.00[CHB][hapmap]
rs13356315	0.93[ASN][1000 genomes]
rs1358224	0.93[ASN][1000 genomes]
rs17403118	1.00[ASN][1000 genomes]
rs34279532	1.00[ASN][1000 genomes]
rs3850728	1.00[ASN][1000 genomes]
rs56819255	0.93[ASN][1000 genomes]
rs60808813	0.93[ASN][1000 genomes]
rs62378112	0.93[ASN][1000 genomes]
rs62380274	1.00[ASN][1000 genomes]
rs73262789	0.93[ASN][1000 genomes]
rs7707471	1.00[ASN][1000 genomes]
rs9327047	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830458	chr5:116831747-117003041	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116987800-116989200	Enhancers	HSMM	muscle
2	chr5:116988000-116988800	Enhancers	Fetal Brain Female	brain
3	chr5:116988000-116988800	Enhancers	Fetal Muscle Leg	muscle
4	chr5:116988000-116989000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:116988400-116989400	Enhancers	Fetal Heart	heart
6	chr5:116988600-116988800	Enhancers	Fetal Stomach	stomach
7	chr5:116988600-116989000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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