Variant report
| Variant | rs17359173 |
|---|---|
| Chromosome Location | chr4:175388082-175388083 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10520284 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10520285 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17060524 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17060532 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17060537 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17060547 | 0.84[EUR][1000 genomes] |
| rs17060557 | 0.84[EUR][1000 genomes] |
| rs17294569 | 1.00[AFR][1000 genomes] |
| rs17294646 | 1.00[AFR][1000 genomes] |
| rs17358909 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17359381 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17360116 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs45445797 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs45446798 | 0.84[EUR][1000 genomes] |
| rs45455595 | 1.00[AFR][1000 genomes] |
| rs45471401 | 0.84[EUR][1000 genomes] |
| rs45498507 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs45499501 | 1.00[AFR][1000 genomes] |
| rs45548931 | 1.00[AFR][1000 genomes] |
| rs45567139 | 1.00[AFR][1000 genomes] |
| rs45592532 | 1.00[AFR][1000 genomes] |
| rs45624235 | 1.00[AFR][1000 genomes] |
| rs4613543 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869116 | chr4:175231090-175801761 | Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:175383600-175388200 | Weak transcription | Muscle Satellite Cultured Cells | -- |
