Variant report

Variant	rs17361254
Chromosome Location	chr4:175460524-175460525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10520280	1.00[ASN][1000 genomes]
rs11725947	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726110	1.00[ASN][1000 genomes]
rs11729325	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365618	1.00[ASN][1000 genomes]
rs17295290	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17362066	1.00[ASN][1000 genomes]
rs2256673	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332877	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2555637	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2612668	1.00[CEU][hapmap]
rs3113885	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35138844	1.00[ASN][1000 genomes]
rs966677	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175458800-175461200	Enhancers	HepG2	liver
2	chr4:175458800-175461400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:175459000-175461200	Enhancers	HMEC	breast
4	chr4:175459000-175461400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:175459000-175461600	Enhancers	Placenta	Placenta
6	chr4:175459200-175461600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:175459800-175461000	Weak transcription	Pancreas	Pancrea
8	chr4:175460000-175461000	Enhancers	GM12878-XiMat	blood
9	chr4:175460000-175461600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:175460200-175461400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:175460200-175461400	Enhancers	NHEK	skin
12	chr4:175460400-175465600	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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