Variant report

Variant	rs17361504
Chromosome Location	chr15:76601871-76601872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76589441..76591088-chr15:76601198..76602843,2	K562	blood:
2	chr15:76579019..76580557-chr15:76600815..76603366,2	K562	blood:
3	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
4	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
5	chr15:76584135..76596152-chr15:76600630..76606670,15	MCF-7	breast:
6	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction
ENSG00000259514	Chromatin interaction
ENSG00000159556	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs11072576	0.88[CHB][hapmap]
rs11072579	0.86[CHB][hapmap]
rs11072580	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072583	0.85[CHB][hapmap]
rs11072585	0.85[CHB][hapmap]
rs11072587	0.86[CHB][hapmap]
rs11072599	0.81[JPT][hapmap]
rs11631874	0.80[ASN][1000 genomes]
rs11633405	0.82[ASN][1000 genomes]
rs11634060	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs11636278	0.82[ASN][1000 genomes]
rs11636851	0.86[CHB][hapmap]
rs12050896	0.85[CHB][hapmap]
rs12148786	0.83[JPT][hapmap]
rs12148805	0.87[JPT][hapmap]
rs12438741	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12439484	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12440815	0.81[EUR][1000 genomes]
rs12442266	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12592171	0.82[CEU][hapmap];0.80[JPT][hapmap]
rs12592501	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12595211	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12595717	0.89[CEU][hapmap];0.95[CHB][hapmap];0.82[EUR][1000 genomes]
rs12595738	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs12898415	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12899871	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs12901160	0.95[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap]
rs12902506	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs12907668	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12907805	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs12908334	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12909718	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12911035	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12913096	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12915248	0.83[JPT][hapmap]
rs12916022	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12916573	0.83[JPT][hapmap]
rs1474117	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1587381	0.83[JPT][hapmap]
rs16968083	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs17362383	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs17364076	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs17364330	0.83[JPT][hapmap]
rs17460201	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs1850722	0.86[CHB][hapmap]
rs1875888	0.84[CHB][hapmap]
rs2117369	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs2139190	0.96[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2176623	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2456045	0.96[CEU][hapmap];0.81[CHD][hapmap];0.80[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs2456046	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs2456050	0.86[CHB][hapmap]
rs2460154	0.89[CEU][hapmap];0.84[JPT][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs2469210	0.82[ASN][1000 genomes]
rs2469541	1.00[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs2469542	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2469548	0.86[CHB][hapmap]
rs2469565	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes]
rs2469566	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs284895	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs2959850	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs2959853	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs34213321	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34893715	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35707798	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3759853	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784449	0.86[CHB][hapmap]
rs3866543	0.89[CEU][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap]
rs3898352	0.86[CHB][hapmap]
rs3915459	0.82[ASN][1000 genomes]
rs3915460	0.82[ASN][1000 genomes]
rs3927264	0.82[ASN][1000 genomes]
rs3958426	0.82[ASN][1000 genomes]
rs3991792	0.82[ASN][1000 genomes]
rs3991793	0.82[ASN][1000 genomes]
rs3991794	0.82[ASN][1000 genomes]
rs4079681	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs4381566	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4633676	0.83[JPT][hapmap]
rs4886484	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs4886485	0.95[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap]
rs4886486	0.80[ASN][1000 genomes]
rs4886487	0.82[ASN][1000 genomes]
rs4886488	0.89[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4886777	0.86[CHB][hapmap]
rs4886779	0.81[CHB][hapmap]
rs4886783	0.86[CHB][hapmap]
rs4886787	0.86[CHB][hapmap]
rs4886788	0.86[CHB][hapmap]
rs4886789	0.86[CHB][hapmap]
rs4886791	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs4886799	0.83[JPT][hapmap]
rs4886801	0.83[JPT][hapmap]
rs56737606	0.80[ASN][1000 genomes]
rs61018254	0.82[ASN][1000 genomes]
rs62027018	0.82[ASN][1000 genomes]
rs62027047	0.80[ASN][1000 genomes]
rs62027048	0.82[ASN][1000 genomes]
rs67418609	0.81[EUR][1000 genomes]
rs7163946	0.83[JPT][hapmap]
rs7164060	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs7164813	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs7174889	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs7177923	0.86[CHB][hapmap]
rs7179142	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs7179750	0.81[ASN][1000 genomes]
rs7180462	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs7403276	0.83[JPT][hapmap]
rs8028504	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs8029637	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs8030411	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs8030454	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs8033494	0.86[CHB][hapmap]
rs8039063	0.80[ASN][1000 genomes]
rs8039545	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs869452	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs870295	0.86[CHB][hapmap]
rs879625	0.86[CHB][hapmap]
rs883993	0.86[CHB][hapmap]
rs937732	0.90[CHB][hapmap]
rs937733	0.86[CHB][hapmap]
rs959991	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs17361504	SCAPER	cis	cerebellum	SCAN
rs17361504	NRG4	cis	parietal	SCAN
rs17361504	ZNF291	cis	multi-tissue	Pritchard
rs17361504	SCAPER	cis	lung	GTEx
rs17361504	ETFA	cis	cerebellum	SCAN
rs17361504	C15orf17	cis	cerebellum	SCAN
rs17361504	SCAPER	cis	parietal	SCAN
rs17361504	SCAPER	cis	Artery Tibial	GTEx

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
2	chr15:76574800-76602000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:76576200-76602800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:76579200-76602000	Weak transcription	Thymus	Thymus
5	chr15:76579600-76602000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:76583600-76602000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:76583800-76602000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:76584600-76602400	Weak transcription	Primary B cells from cord blood	blood
9	chr15:76584800-76602000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:76584800-76602200	Weak transcription	Fetal Thymus	thymus
11	chr15:76585000-76602000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:76585200-76602400	Weak transcription	Primary T cells from cord blood	blood
13	chr15:76586200-76602000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:76586200-76602400	Weak transcription	NH-A	brain
15	chr15:76586400-76602000	Weak transcription	Stomach Mucosa	stomach
16	chr15:76586400-76602400	Weak transcription	Brain Hippocampus Middle	brain
17	chr15:76588000-76602000	Weak transcription	Psoas Muscle	Psoas
18	chr15:76589600-76602000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:76591000-76602000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:76591000-76602000	Weak transcription	Ovary	ovary
21	chr15:76592000-76602000	Weak transcription	Fetal Intestine Large	intestine
22	chr15:76592000-76602200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr15:76592000-76602200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:76592200-76602200	Weak transcription	Spleen	Spleen
25	chr15:76592400-76602000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:76592600-76602400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:76593200-76602000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr15:76593200-76602000	Weak transcription	Small Intestine	intestine
29	chr15:76593400-76602000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr15:76593400-76602000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr15:76593400-76602400	Weak transcription	Lung	lung
32	chr15:76593400-76602600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:76593600-76602000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr15:76593800-76602000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr15:76595000-76602000	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:76595400-76602000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:76596200-76602200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr15:76597000-76602600	Weak transcription	Fetal Intestine Small	intestine
39	chr15:76598400-76602000	Weak transcription	Fetal Heart	heart
40	chr15:76598400-76602000	Weak transcription	Right Ventricle	heart
41	chr15:76599400-76602800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:76599800-76602000	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr15:76599800-76602000	Weak transcription	Colonic Mucosa	Colon
44	chr15:76599800-76602400	Weak transcription	Fetal Brain Female	brain
45	chr15:76600000-76602000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr15:76600200-76602000	Weak transcription	Left Ventricle	heart
47	chr15:76600200-76602200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:76600600-76602000	Genic enhancers	A549	lung
49	chr15:76600800-76602000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:76600800-76602000	Enhancers	Adipose Nuclei	Adipose

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