Variant report

Variant	rs17362066
Chromosome Location	chr4:175479365-175479366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10520280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725947	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11729325	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365618	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295290	1.00[ASN][1000 genomes]
rs17361254	1.00[ASN][1000 genomes]
rs2256673	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332877	0.93[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2555637	0.93[CEU][hapmap];1.00[ASN][1000 genomes]
rs2612668	0.93[CEU][hapmap]
rs3113885	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35138844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72706188	1.00[AFR][1000 genomes]
rs72706196	1.00[AFR][1000 genomes]
rs72706197	1.00[AFR][1000 genomes]
rs72706199	1.00[AFR][1000 genomes]
rs966677	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv881376	chr4:175466101-175513812	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv880800	chr4:175476462-175513812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv881268	chr4:175476462-175513812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv881481	chr4:175476462-175515345	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv881192	chr4:175476462-175523073	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175466600-175484600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:175475800-175480800	Weak transcription	Fetal Stomach	stomach
3	chr4:175476000-175480800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:175476000-175481000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:175477400-175482800	Weak transcription	Fetal Intestine Small	intestine
6	chr4:175478000-175479600	Enhancers	Stomach Mucosa	stomach
7	chr4:175478600-175480200	Weak transcription	Placenta	Placenta
8	chr4:175478800-175479800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr4:175479000-175479400	Enhancers	Primary hematopoietic stem cells	blood
10	chr4:175479000-175479600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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