Variant report

Variant	rs17371133
Chromosome Location	chr1:172828480-172828481
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10737295	0.82[ASN][1000 genomes]
rs10912487	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11580042	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12037781	0.82[ASN][1000 genomes]
rs1988983	0.82[ASN][1000 genomes]
rs4916197	0.87[ASN][1000 genomes]
rs57701379	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61828367	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6664499	0.82[ASN][1000 genomes]
rs6672265	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2636908	chr1:172827734-172829200	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172820600-172840200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:172826600-172830400	Weak transcription	Right Atrium	heart
3	chr1:172828400-172828600	Enhancers	A549	lung
4	chr1:172828400-172828600	Enhancers	HUVEC	blood vessel
5	chr1:172828400-172828800	Enhancers	HMEC	breast
6	chr1:172828400-172828800	Enhancers	HSMM	muscle
7	chr1:172828400-172828800	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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