Variant report

Variant	rs17376417
Chromosome Location	chr11:75968121-75968122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75945993..75948366-chr11:75966574..75968254,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4945054	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4945057	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56383009	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv897926	chr11:75862571-76004202	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1040118	chr11:75870189-75995089	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv1053129	chr11:75871240-75997663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv12458	chr11:75967239-75969847	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv528902	chr11:75967695-75973078	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75962600-75983600	Weak transcription	Spleen	Spleen
2	chr11:75963200-75976000	Weak transcription	Right Atrium	heart
3	chr11:75965000-75968200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:75965200-75974000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:75967400-75968800	Enhancers	Fetal Brain Male	brain
6	chr11:75967600-75968200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:75967600-75968200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr11:75967600-75968400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:75967600-75968600	Enhancers	Placenta	Placenta
10	chr11:75967600-75968800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:75967800-75968200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:75967800-75968200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:75967800-75968200	Enhancers	Fetal Lung	lung
14	chr11:75967800-75968200	Flanking Bivalent TSS/Enh	HepG2	liver
15	chr11:75967800-75968400	Enhancers	Placenta Amnion	Placenta Amnion
16	chr11:75967800-75968600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:75967800-75968600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:75967800-75968600	Enhancers	Fetal Muscle Leg	muscle
19	chr11:75967800-75968800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr11:75967800-75968800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr11:75967800-75968800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr11:75968000-75968200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:75968000-75968200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:75968000-75968200	Enhancers	Fetal Thymus	thymus
25	chr11:75968000-75968400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:75968000-75968600	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr11:75968000-75968800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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