Variant report

Variant	rs17385858
Chromosome Location	chr5:118711138-118711139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118710862..118712534-chr5:118716345..118718810,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10053596	1.00[CHB][hapmap]
rs1035376	1.00[CHB][hapmap]
rs2112323	1.00[CHB][hapmap]
rs4895188	1.00[CHB][hapmap]
rs6876958	1.00[CHB][hapmap]
rs6879919	1.00[CHB][hapmap]
rs888772	1.00[CHB][hapmap]
rs9327095	1.00[CHB][hapmap]
rs9327097	1.00[CHB][hapmap]
rs9327098	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118700200-118713800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:118702800-118713400	Weak transcription	Aorta	Aorta
3	chr5:118702800-118713400	Weak transcription	Fetal Stomach	stomach
4	chr5:118702800-118713600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:118702800-118714400	Weak transcription	Placenta	Placenta
6	chr5:118702800-118715000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr5:118702800-118715400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:118702800-118720000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:118702800-118720800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:118702800-118722400	Weak transcription	Spleen	Spleen
11	chr5:118702800-118723800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:118702800-118736000	Weak transcription	Fetal Muscle Leg	muscle
13	chr5:118703000-118713000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:118703800-118714000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:118704400-118722800	Weak transcription	HMEC	breast
16	chr5:118704400-118728400	Weak transcription	Hela-S3	cervix
17	chr5:118704600-118714200	Weak transcription	Adipose Nuclei	Adipose
18	chr5:118704600-118723400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:118705000-118711200	Genic enhancers	Primary B cells from peripheral blood	blood
20	chr5:118705600-118711800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr5:118705800-118714400	Weak transcription	Thymus	Thymus
22	chr5:118706000-118713400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr5:118706400-118720600	Weak transcription	Small Intestine	intestine
24	chr5:118706600-118722400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr5:118706800-118712400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr5:118706800-118713600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr5:118706800-118713800	Weak transcription	Fetal Heart	heart
28	chr5:118706800-118717800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr5:118707200-118713200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
30	chr5:118707200-118713400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:118707200-118713400	Weak transcription	Osteobl	bone
32	chr5:118707200-118713800	Weak transcription	HSMMtube	muscle
33	chr5:118707200-118713800	Weak transcription	K562	blood
34	chr5:118707400-118713400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:118707400-118718600	Genic enhancers	Primary T cells fromperipheralblood	blood
36	chr5:118707600-118715000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr5:118707600-118715000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr5:118707600-118715200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:118707600-118754600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr5:118707800-118716800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr5:118708800-118711200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr5:118708800-118711200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
43	chr5:118709000-118711200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr5:118709400-118711200	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr5:118709400-118712400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr5:118709400-118719800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr5:118709400-118727800	Weak transcription	Dnd41	blood
48	chr5:118709600-118723400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr5:118709800-118713400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr5:118710200-118711200	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links