Variant report

Variant	rs17390895
Chromosome Location	chr7:104017586-104017587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104015338..104017844-chr7:104195492..104197847,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10228106	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs10249235	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10254627	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953427	0.95[YRI][hapmap]
rs10953428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10953432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1123760	0.93[CEU][hapmap]
rs12216592	0.96[YRI][hapmap]
rs12705208	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs1468143	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs1468144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1989823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2040584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2188482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2188493	0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2188494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2214084	0.96[YRI][hapmap]
rs2214086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2214087	0.95[YRI][hapmap]
rs4236567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727596	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap]
rs4727599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs4730001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4730002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4730006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4730007	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6465985	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs6946555	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6951873	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6952170	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6959400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7778325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7790817	0.95[YRI][hapmap]
rs7798273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104016800-104018200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:104017000-104017600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:104017000-104018200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:104017400-104017600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:104017400-104018000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:104017400-104018200	Enhancers	HUES48 Cell Line	embryonic stem cell

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