Variant report
| Variant | rs17396843 |
|---|---|
| Chromosome Location | chr6:64330565-64330566 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:64330018..64332736-chr6:64335111..64337930,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10943869 | 0.95[CEU][hapmap];0.83[JPT][hapmap] |
| rs12523702 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13191932 | 0.87[EUR][1000 genomes] |
| rs13205487 | 0.82[EUR][1000 genomes] |
| rs1744134 | 0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap] |
| rs1744153 | 1.00[JPT][hapmap] |
| rs1857565 | 0.87[YRI][hapmap] |
| rs2622277 | 0.87[YRI][hapmap] |
| rs2622312 | 0.80[CEU][hapmap];1.00[JPT][hapmap] |
| rs2627797 | 0.93[YRI][hapmap] |
| rs6916092 | 0.81[EUR][1000 genomes] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs17396843 | LGSN | cis | Whole Blood | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
