Variant report

Variant	rs17397667
Chromosome Location	chr2:21184847-21184848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20859421..20861870-chr2:21182899..21185433,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10199768	0.86[JPT][hapmap]
rs10495712	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11096689	0.81[AMR][1000 genomes]
rs13392272	0.93[ASN][1000 genomes]
rs1801702	0.87[YRI][hapmap]
rs2337381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34059329	0.86[AFR][1000 genomes]
rs4665788	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55938327	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142315	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62120837	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62120838	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62120842	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62120843	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62120847	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62120852	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62122481	0.93[ASN][1000 genomes]
rs68093099	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693	0.83[ASN][1000 genomes]
rs938848	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952275	0.90[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21181000-21191400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:21184200-21185200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:21184200-21185800	Enhancers	Stomach Smooth Muscle	stomach
4	chr2:21184200-21186000	Enhancers	Colon Smooth Muscle	Colon
5	chr2:21184200-21186000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr2:21184400-21185800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr2:21184400-21186000	Enhancers	Aorta	Aorta
8	chr2:21184600-21185000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:21184600-21185600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr2:21184800-21185000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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