Variant report

Variant	rs17400185
Chromosome Location	chr4:86731032-86731033
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10516758	1.00[ASN][1000 genomes]
rs10516759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516760	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10516761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516762	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13125320	1.00[ASN][1000 genomes]
rs1452681	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17395020	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17395132	1.00[ASN][1000 genomes]
rs17395223	1.00[ASN][1000 genomes]
rs17395916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17399123	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17399707	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17399908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089763	1.00[ASN][1000 genomes]
rs2601851	1.00[CHB][hapmap]
rs2601870	1.00[ASN][1000 genomes]
rs3114384	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs343847	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs345328	1.00[CHB][hapmap]
rs345330	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs345334	1.00[ASN][1000 genomes]
rs345340	1.00[ASN][1000 genomes]
rs345355	1.00[ASN][1000 genomes]
rs345359	1.00[ASN][1000 genomes]
rs55937611	1.00[ASN][1000 genomes]
rs56305839	1.00[ASN][1000 genomes]
rs71599426	1.00[ASN][1000 genomes]
rs71599428	1.00[ASN][1000 genomes]
rs745892	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86718200-86733800	Weak transcription	Gastric	stomach
2	chr4:86722000-86731400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr4:86727800-86735800	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:86728200-86747200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:86729000-86734000	Weak transcription	Left Ventricle	heart
6	chr4:86729000-86735600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:86729000-86739400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:86729000-86744600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:86729200-86733800	Weak transcription	NH-A	brain
10	chr4:86729200-86736200	Weak transcription	Fetal Stomach	stomach
11	chr4:86729400-86747400	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:86729800-86731200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:86729800-86733600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:86729800-86733600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:86729800-86733800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:86729800-86734000	Weak transcription	Right Atrium	heart
17	chr4:86729800-86734800	Weak transcription	Fetal Kidney	kidney
18	chr4:86729800-86743600	Weak transcription	HSMMtube	muscle
19	chr4:86729800-86744600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:86730000-86733400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:86730000-86733800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:86730200-86731600	Enhancers	HUVEC	blood vessel
23	chr4:86730200-86733600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:86730200-86733600	Weak transcription	Osteobl	bone
25	chr4:86730200-86741400	Weak transcription	HSMM	muscle
26	chr4:86730400-86733600	Weak transcription	NHDF-Ad	bronchial
27	chr4:86730600-86731800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr4:86730800-86731600	Enhancers	H9 Cell Line	embryonic stem cell
29	chr4:86730800-86731800	Strong transcription	Primary B cells from peripheral blood	blood
30	chr4:86730800-86732200	Strong transcription	Primary B cells from cord blood	blood
31	chr4:86731000-86731200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:86731000-86731200	Weak transcription	Pancreas	Pancrea
33	chr4:86731000-86733800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:86731000-86739600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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