Variant report

Variant	rs17405711
Chromosome Location	chr2:77178484-77178485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10208087	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10520174	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs10520177	0.85[CEU][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs10520179	0.81[TSI][hapmap]
rs1075716	0.83[CEU][hapmap]
rs1077111	0.85[CEU][hapmap];0.81[MEX][hapmap];0.80[EUR][1000 genomes]
rs11694677	1.00[ASW][hapmap]
rs11901979	0.93[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs1319244	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs13388459	0.85[CEU][hapmap]
rs13413951	0.85[CEU][hapmap]
rs1446708	0.85[CEU][hapmap]
rs1446721	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17013455	0.81[TSI][hapmap]
rs17013567	0.85[CEU][hapmap]
rs17013635	0.81[TSI][hapmap]
rs17333276	0.82[CHB][hapmap];1.00[AFR][1000 genomes]
rs17333303	0.84[CHB][hapmap];1.00[AFR][1000 genomes]
rs17333404	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs17333578	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17333696	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17333850	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17333884	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs17333926	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17334205	0.85[CEU][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs17334240	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs17334254	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs17334261	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs17334527	0.81[MEX][hapmap];0.81[TSI][hapmap]
rs17405004	0.82[CHB][hapmap]
rs17405288	0.83[CHD][hapmap];0.94[GIH][hapmap]
rs17405433	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap]
rs17405440	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs17405724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17405864	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17405905	0.80[EUR][1000 genomes]
rs17405953	0.85[CEU][hapmap];0.84[AMR][1000 genomes]
rs17405981	0.85[CEU][hapmap];0.84[AMR][1000 genomes]
rs17406009	1.00[ASW][hapmap];0.85[CEU][hapmap];0.81[TSI][hapmap]
rs17406023	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs17406084	0.81[TSI][hapmap]
rs17406091	0.83[CEU][hapmap]
rs17406146	0.85[CEU][hapmap]
rs17406202	0.85[CEU][hapmap]
rs17406374	0.85[CEU][hapmap]
rs17406465	0.81[TSI][hapmap]
rs1921627	0.81[TSI][hapmap]
rs1929454	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1929455	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1929457	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs1929458	0.93[TSI][hapmap]
rs2077823	0.85[CEU][hapmap]
rs34007251	0.81[TSI][hapmap]
rs3820749	1.00[ASW][hapmap]
rs4396752	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs4401235	0.80[EUR][1000 genomes]
rs4447628	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4491748	0.85[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4637153	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs4853285	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs62170209	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs62170328	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62170329	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62170330	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62170331	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62170332	0.93[EUR][1000 genomes]
rs62170336	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62170337	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62170339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62170872	1.00[AFR][1000 genomes]
rs62171961	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62171964	0.81[AMR][1000 genomes]
rs62171994	0.81[AMR][1000 genomes]
rs62171995	0.80[EUR][1000 genomes]
rs62171996	0.80[EUR][1000 genomes]
rs62171997	0.80[EUR][1000 genomes]
rs62173104	1.00[AFR][1000 genomes]
rs6742824	0.85[CEU][hapmap]
rs72823112	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823135	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72823137	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72823174	0.80[EUR][1000 genomes]
rs7425906	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs7604637	0.81[TSI][hapmap]
rs953855	0.83[EUR][1000 genomes]
rs956657	1.00[ASW][hapmap];0.85[CEU][hapmap]
rs985751	0.84[CEU][hapmap];0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv818054	chr2:77172693-77192765	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1008307	chr2:77174354-77197565	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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