Variant report

Variant	rs17406416
Chromosome Location	chr2:77259869-77259870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10172981	0.84[EUR][1000 genomes]
rs10208087	0.87[EUR][1000 genomes]
rs10520174	1.00[YRI][hapmap]
rs10520177	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs10520179	0.91[CEU][hapmap]
rs1075716	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs1077111	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs13388459	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs13413951	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1345137	0.95[EUR][1000 genomes]
rs1446696	1.00[CEU][hapmap]
rs1446708	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1446721	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs17013567	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17013635	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17333383	1.00[YRI][hapmap]
rs17333850	1.00[YRI][hapmap]
rs17333926	0.88[EUR][1000 genomes]
rs17334205	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs17334240	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs17334254	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs17334261	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs17334506	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs17334527	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes]
rs17405288	1.00[YRI][hapmap]
rs17405864	0.90[EUR][1000 genomes]
rs17405905	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs17405953	0.92[CEU][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs17405981	0.92[CEU][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs17406009	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs17406023	0.92[CEU][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs17406084	0.86[EUR][1000 genomes]
rs17406091	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs17406146	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs17406202	0.92[CEU][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs17406374	0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs17406395	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs17406465	0.91[CEU][hapmap]
rs1929454	1.00[YRI][hapmap]
rs1929455	1.00[YRI][hapmap]
rs1929457	1.00[YRI][hapmap]
rs1960005	0.96[EUR][1000 genomes]
rs2077823	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs28876375	0.81[AFR][1000 genomes]
rs34007251	0.82[EUR][1000 genomes]
rs4396752	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs4401235	0.92[EUR][1000 genomes]
rs4447628	0.92[CEU][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs4491748	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs4637153	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs4853285	1.00[YRI][hapmap]
rs55800138	0.96[EUR][1000 genomes]
rs55864802	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56055201	0.89[EUR][1000 genomes]
rs62170208	0.92[EUR][1000 genomes]
rs62170209	0.91[EUR][1000 genomes]
rs62170210	0.92[EUR][1000 genomes]
rs62170864	0.92[EUR][1000 genomes]
rs62170865	0.92[EUR][1000 genomes]
rs62170866	0.92[EUR][1000 genomes]
rs62170872	0.95[EUR][1000 genomes]
rs62170895	0.96[EUR][1000 genomes]
rs62170896	0.96[EUR][1000 genomes]
rs62170899	0.98[EUR][1000 genomes]
rs62170910	0.90[EUR][1000 genomes]
rs62170911	0.90[EUR][1000 genomes]
rs62170913	0.86[EUR][1000 genomes]
rs62170914	0.90[EUR][1000 genomes]
rs62170916	0.90[EUR][1000 genomes]
rs62170918	0.89[EUR][1000 genomes]
rs62171961	0.90[EUR][1000 genomes]
rs62171964	0.91[EUR][1000 genomes]
rs62171994	0.90[EUR][1000 genomes]
rs62171995	0.92[EUR][1000 genomes]
rs62171996	0.92[EUR][1000 genomes]
rs62171997	0.92[EUR][1000 genomes]
rs66769122	0.91[EUR][1000 genomes]
rs6715191	1.00[YRI][hapmap]
rs6742824	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs72823135	0.89[EUR][1000 genomes]
rs72823137	0.89[EUR][1000 genomes]
rs72823174	0.92[EUR][1000 genomes]
rs72823176	0.92[EUR][1000 genomes]
rs72823182	0.91[EUR][1000 genomes]
rs72823183	0.91[EUR][1000 genomes]
rs72823195	0.96[EUR][1000 genomes]
rs72823196	0.96[EUR][1000 genomes]
rs72823197	0.96[EUR][1000 genomes]
rs72825338	0.88[EUR][1000 genomes]
rs7425906	1.00[YRI][hapmap]
rs956657	0.91[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs985751	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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