Variant report

Variant	rs17409947
Chromosome Location	chr2:37522367-37522368
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37521665..37524333-chr2:37525005..37526903,2	K562	blood:
2	chr2:37515749..37518986-chr2:37519736..37522711,3	K562	blood:

Variant related genes	Relation type
ENSG00000115825	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10198835	0.93[CEU][hapmap]
rs11124576	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11124578	0.86[CEU][hapmap]
rs11689186	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs1477055	0.87[CEU][hapmap]
rs17481834	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2110963	0.93[CEU][hapmap];0.92[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2160394	0.93[CEU][hapmap];0.92[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2268987	0.82[CEU][hapmap]
rs2300881	0.87[CEU][hapmap]
rs2300884	0.88[CEU][hapmap]
rs2300885	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2300892	0.93[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2302650	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2302653	0.90[ASN][1000 genomes]
rs2888463	0.97[ASN][1000 genomes]
rs3770763	0.93[CEU][hapmap];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3819892	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4670192	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55991517	0.94[EUR][1000 genomes]
rs56059107	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59262093	0.90[ASN][1000 genomes]
rs61208496	0.94[EUR][1000 genomes]
rs6726709	0.93[CEU][hapmap];0.92[CHB][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72792821	0.94[EUR][1000 genomes]
rs72792835	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876461	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9318	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
2	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
3	chr2:37482800-37528600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:37484200-37539000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
6	chr2:37487200-37528600	Weak transcription	Brain Substantia Nigra	brain
7	chr2:37499400-37522800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:37499400-37528600	Weak transcription	Brain Anterior Caudate	brain
9	chr2:37499400-37540200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr2:37500200-37529800	Weak transcription	Fetal Intestine Small	intestine
11	chr2:37500200-37530200	Weak transcription	Gastric	stomach
12	chr2:37500600-37530200	Weak transcription	Thymus	Thymus
13	chr2:37502200-37528200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:37502200-37528600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:37502600-37524600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr2:37502600-37528600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr2:37502600-37532600	Weak transcription	Small Intestine	intestine
18	chr2:37502600-37533000	Weak transcription	Psoas Muscle	Psoas
19	chr2:37502600-37535800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:37502800-37528800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr2:37502800-37528800	Weak transcription	Brain Hippocampus Middle	brain
22	chr2:37502800-37533800	Weak transcription	Lung	lung
23	chr2:37502800-37543400	Weak transcription	Esophagus	oesophagus
24	chr2:37509000-37550800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr2:37509600-37528600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr2:37509600-37539000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr2:37510200-37526600	Weak transcription	K562	blood
28	chr2:37510600-37536600	Weak transcription	Placenta	Placenta
29	chr2:37510800-37532200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr2:37511000-37533600	Weak transcription	Left Ventricle	heart
31	chr2:37511000-37550800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr2:37511200-37530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:37511200-37534600	Weak transcription	HSMMtube	muscle
34	chr2:37511800-37528600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr2:37512600-37523000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr2:37513600-37543200	Weak transcription	NHLF	lung
37	chr2:37515600-37527800	Weak transcription	A549	lung
38	chr2:37515600-37530200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:37515600-37539000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr2:37515800-37545400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr2:37516000-37528600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:37516600-37526400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr2:37516600-37528600	Weak transcription	NHDF-Ad	bronchial
44	chr2:37516600-37532800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:37516800-37545200	Weak transcription	Fetal Kidney	kidney
46	chr2:37517400-37542400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr2:37517600-37537800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr2:37518200-37539600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr2:37518800-37523200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr2:37518800-37532600	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links