Variant report

Variant	rs17410356
Chromosome Location	chr7:101693543-101693544
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10231704	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10243429	1.00[CHB][hapmap]
rs10245459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245816	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246310	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249739	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252737	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259603	1.00[CHB][hapmap]
rs10261132	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271376	1.00[CHB][hapmap]
rs10277680	1.00[CHB][hapmap]
rs11769397	1.00[CHB][hapmap]
rs11975663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11979916	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11982462	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537526	1.00[CHB][hapmap]
rs12537930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538286	1.00[CHB][hapmap]
rs12538702	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12539349	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12539846	1.00[CHB][hapmap]
rs12540846	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17409879	1.00[CHB][hapmap]
rs17494372	0.88[YRI][hapmap]
rs17495148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17495210	0.92[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17496657	1.00[CHB][hapmap]
rs28401723	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28502241	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28715744	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55704423	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55851631	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55974420	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58414903	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67245174	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67737740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959475	1.00[CHB][hapmap]
rs6959827	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6973312	1.00[CHB][hapmap]
rs73185880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73185883	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73185884	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776498	1.00[CHB][hapmap]
rs7780631	1.00[CHB][hapmap]
rs7797764	1.00[CHB][hapmap]
rs7798358	1.00[CHB][hapmap]
rs7805379	1.00[CHB][hapmap]
rs9655773	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv482521	chr7:101604002-101718950	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831080	chr7:101629121-101718950	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1027574	chr7:101654060-101718950	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv607985	chr7:101683563-101718950	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101642800-101697600	Weak transcription	Primary B cells from cord blood	blood
2	chr7:101668000-101707200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:101668600-101694200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:101672200-101697000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:101672400-101694000	Weak transcription	Primary T cells from cord blood	blood
6	chr7:101672400-101697200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:101673200-101694200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:101674200-101707400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:101674400-101696800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr7:101674400-101697000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:101679000-101695200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:101684200-101697400	Weak transcription	Liver	Liver
13	chr7:101685600-101697200	Weak transcription	HepG2	liver
14	chr7:101685800-101694000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:101685800-101694000	Weak transcription	NHEK	skin
16	chr7:101686400-101694000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:101686800-101693800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:101688400-101697000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:101688400-101706400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:101688600-101707200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:101689000-101695200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr7:101689200-101694200	Weak transcription	Gastric	stomach
23	chr7:101689400-101693600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:101689400-101693800	Weak transcription	Brain Substantia Nigra	brain
25	chr7:101689400-101694200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr7:101689400-101694200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:101689400-101697400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:101689400-101706400	Weak transcription	Stomach Mucosa	stomach
29	chr7:101689400-101714600	Weak transcription	HSMMtube	muscle
30	chr7:101689600-101693600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:101689600-101696600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:101689800-101694200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:101689800-101694600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr7:101689800-101714800	Weak transcription	NHLF	lung
35	chr7:101690000-101704600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr7:101690200-101694200	Weak transcription	HSMM	muscle
37	chr7:101690200-101696600	Weak transcription	Fetal Muscle Leg	muscle
38	chr7:101690200-101705000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr7:101690400-101693800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:101690400-101693800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr7:101690400-101694000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr7:101690400-101694000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr7:101690400-101704600	Weak transcription	Spleen	Spleen
44	chr7:101690400-101704800	Weak transcription	Placenta	Placenta
45	chr7:101690600-101713800	Weak transcription	Fetal Lung	lung
46	chr7:101690600-101713800	Weak transcription	Ovary	ovary
47	chr7:101691000-101694400	Enhancers	Fetal Heart	heart
48	chr7:101691200-101694400	Weak transcription	A549	lung
49	chr7:101692200-101693800	Strong transcription	Fetal Intestine Large	intestine
50	chr7:101692600-101693600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links