Variant report

Variant	rs17412060
Chromosome Location	chr14:32966245-32966246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32960517..32962763-chr14:32965947..32968898,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17412116	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957027	1.00[JPT][hapmap]
rs1957030	1.00[JPT][hapmap]
rs60217119	1.00[ASN][1000 genomes]
rs60993482	0.86[ASN][1000 genomes]
rs61982982	1.00[ASN][1000 genomes]
rs61982983	1.00[ASN][1000 genomes]
rs6571530	1.00[CHB][hapmap]
rs7148326	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8014051	1.00[ASN][1000 genomes]
rs8017798	1.00[ASN][1000 genomes]
rs8018953	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32963400-32968800	Active TSS	Right Ventricle	heart
2	chr14:32963600-32967200	Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr14:32963800-32966400	Active TSS	Left Ventricle	heart
4	chr14:32963800-32966600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:32963800-32966600	Active TSS	Right Atrium	heart
6	chr14:32963800-32967000	Active TSS	Psoas Muscle	Psoas
7	chr14:32963800-32967600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr14:32964000-32966400	Active TSS	Fetal Muscle Trunk	muscle
9	chr14:32964000-32966600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr14:32964000-32967200	Active TSS	Fetal Heart	heart
11	chr14:32964000-32967600	Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr14:32964000-32967800	Active TSS	HSMMtube	muscle
13	chr14:32964400-32969200	Weak transcription	Fetal Lung	lung
14	chr14:32964600-32969200	Weak transcription	Hela-S3	cervix
15	chr14:32964800-32966400	Enhancers	Brain Anterior Caudate	brain
16	chr14:32964800-32966400	Enhancers	Brain Substantia Nigra	brain
17	chr14:32964800-32966400	Active TSS	NHDF-Ad	bronchial
18	chr14:32964800-32966600	Enhancers	Brain Cingulate Gyrus	brain
19	chr14:32964800-32967200	Active TSS	Fetal Muscle Leg	muscle
20	chr14:32964800-32969800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:32965000-32966400	Enhancers	Brain Hippocampus Middle	brain
22	chr14:32965000-32966400	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr14:32965000-32970600	Weak transcription	Aorta	Aorta
24	chr14:32965400-32966600	Enhancers	Colon Smooth Muscle	Colon
25	chr14:32965400-32967200	Enhancers	Brain Angular Gyrus	brain
26	chr14:32965400-32976400	Weak transcription	HSMM	muscle
27	chr14:32965600-32967400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr14:32965800-32966400	Enhancers	Stomach Smooth Muscle	stomach
29	chr14:32966000-32966400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:32966000-32966600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr14:32966000-32969400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr14:32966200-32966400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:32966200-32966800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr14:32966200-32967200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr14:32966200-32967200	Enhancers	Osteobl	bone

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