Variant report

Variant	rs17413771
Chromosome Location	chr1:86467219-86467220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10518360	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10518362	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs12097262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12353970	1.00[ASN][1000 genomes]
rs12729383	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12730639	1.00[ASN][1000 genomes]
rs12743320	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12743750	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12744993	1.00[ASN][1000 genomes]
rs12748730	1.00[ASN][1000 genomes]
rs1359419	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs17405880	0.81[EUR][1000 genomes]
rs17405900	0.81[EUR][1000 genomes]
rs17406104	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs17406138	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs17406173	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs17406644	1.00[ASN][1000 genomes]
rs17414498	0.81[EUR][1000 genomes]
rs17414519	0.81[EUR][1000 genomes]
rs17414568	0.81[EUR][1000 genomes]
rs17414617	0.81[EUR][1000 genomes]
rs17414884	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17415692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4912442	0.81[EUR][1000 genomes]
rs4912443	0.81[EUR][1000 genomes]
rs4912455	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4912459	0.81[EUR][1000 genomes]
rs511363	0.90[EUR][1000 genomes]
rs56229462	0.81[EUR][1000 genomes]
rs56353901	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56392000	0.81[EUR][1000 genomes]
rs59767206	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs634946	0.85[CEU][hapmap]
rs635713	0.84[CEU][hapmap]
rs648866	1.00[ASN][1000 genomes]
rs67472012	0.88[ASN][1000 genomes]
rs72716134	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72716145	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72716149	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72958294	1.00[ASN][1000 genomes]
rs72960324	1.00[ASN][1000 genomes]
rs72960354	1.00[ASN][1000 genomes]
rs72960374	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7411998	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817212	chr1:86127851-86658426	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv462406	chr1:86412177-86509996	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv546757	chr1:86412177-86509996	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv546758	chr1:86438327-86483632	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1012808	chr1:86455710-86470489	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86459200-86472000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:86459200-86472200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:86464000-86469800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:86466600-86468400	Weak transcription	Fetal Lung	lung
5	chr1:86466600-86469000	Weak transcription	Fetal Muscle Leg	muscle

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