Variant report

Variant	rs1741799
Chromosome Location	chr6:64064510-64064511
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64061851..64067000-chr6:64282014..64286349,7	MCF-7	breast:
2	chr6:64059286..64067591-chr6:64279675..64285580,14	MCF-7	breast:
3	chr6:64062103..64065068-chr6:64510364..64512443,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs1010057	0.95[EUR][1000 genomes]
rs1320419	0.95[EUR][1000 genomes]
rs1404779	0.95[EUR][1000 genomes]
rs1464865	0.95[EUR][1000 genomes]
rs1464866	0.90[EUR][1000 genomes]
rs1525354	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1525355	0.95[EUR][1000 genomes]
rs1525357	0.95[EUR][1000 genomes]
rs1608812	0.81[EUR][1000 genomes]
rs1619321	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1621804	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1625205	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1628449	0.90[EUR][1000 genomes]
rs1631333	0.81[EUR][1000 genomes]
rs1711897	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1711898	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1711899	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1711900	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1711901	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1711902	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1711903	0.90[EUR][1000 genomes]
rs1711904	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1711906	0.95[EUR][1000 genomes]
rs1711907	0.81[ASN][1000 genomes]
rs1711912	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1711913	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1711914	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1711915	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1711918	0.95[EUR][1000 genomes]
rs1711919	0.81[EUR][1000 genomes]
rs1711927	0.95[EUR][1000 genomes]
rs1711928	0.95[EUR][1000 genomes]
rs1723497	0.95[EUR][1000 genomes]
rs1723498	0.95[EUR][1000 genomes]
rs1723499	0.95[EUR][1000 genomes]
rs1723500	0.95[EUR][1000 genomes]
rs1723502	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1723503	0.95[EUR][1000 genomes]
rs1723504	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1723506	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1723507	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1723508	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1723528	0.86[EUR][1000 genomes]
rs1723531	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1741780	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1741782	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1741783	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1741784	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1741786	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1741787	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1741788	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1741789	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1741790	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1741802	0.81[EUR][1000 genomes]
rs1741805	0.95[EUR][1000 genomes]
rs1741810	0.95[EUR][1000 genomes]
rs1741813	0.95[EUR][1000 genomes]
rs1779745	0.81[EUR][1000 genomes]
rs1779753	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1779755	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1779756	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1779757	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1779758	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1779760	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1779761	0.88[AMR][1000 genomes]
rs1779762	0.92[AMR][1000 genomes]
rs1857565	0.81[EUR][1000 genomes]
rs1936532	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2005098	0.95[EUR][1000 genomes]
rs2474905	0.84[AMR][1000 genomes]
rs2474908	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2622306	0.81[EUR][1000 genomes]
rs2622308	0.81[EUR][1000 genomes]
rs2677021	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677022	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2677023	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2677024	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2677026	0.95[EUR][1000 genomes]
rs2677027	0.95[EUR][1000 genomes]
rs2677028	0.95[EUR][1000 genomes]
rs2677029	0.95[EUR][1000 genomes]
rs2753064	0.81[EUR][1000 genomes]
rs2753065	0.81[EUR][1000 genomes]
rs2753069	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2753070	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2753071	0.95[EUR][1000 genomes]
rs2753072	0.95[EUR][1000 genomes]
rs2753073	0.95[EUR][1000 genomes]
rs2753074	0.95[EUR][1000 genomes]
rs2800020	0.81[EUR][1000 genomes]
rs2800021	0.81[EUR][1000 genomes]
rs2800024	0.81[EUR][1000 genomes]
rs2800025	0.81[EUR][1000 genomes]
rs2800029	0.81[EUR][1000 genomes]
rs2800031	0.95[EUR][1000 genomes]
rs2800034	0.95[EUR][1000 genomes]
rs2800035	0.95[EUR][1000 genomes]
rs2800036	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4710426	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4710427	0.88[AMR][1000 genomes]
rs482904	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58623141	0.84[AMR][1000 genomes]
rs59943612	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60505637	0.81[EUR][1000 genomes]
rs61229307	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6454169	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6933112	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs732948	0.95[EUR][1000 genomes]
rs7381742	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7382020	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7739266	0.84[AMR][1000 genomes]
rs7750785	0.95[EUR][1000 genomes]
rs7752941	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7757686	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7758841	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7761720	0.85[EUR][1000 genomes]
rs7771677	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7771703	0.85[EUR][1000 genomes]
rs824372	0.86[ASN][1000 genomes]
rs824373	0.95[EUR][1000 genomes]
rs824374	0.95[EUR][1000 genomes]
rs824375	0.95[EUR][1000 genomes]
rs824376	0.95[EUR][1000 genomes]
rs824377	0.95[EUR][1000 genomes]
rs824378	0.95[EUR][1000 genomes]
rs824379	0.95[EUR][1000 genomes]
rs824380	0.95[EUR][1000 genomes]
rs824381	0.95[EUR][1000 genomes]
rs824383	0.95[EUR][1000 genomes]
rs824385	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs824387	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs824388	0.81[EUR][1000 genomes]
rs824390	0.95[EUR][1000 genomes]
rs824391	0.95[EUR][1000 genomes]
rs824392	0.95[EUR][1000 genomes]
rs824393	0.95[EUR][1000 genomes]
rs824394	0.95[EUR][1000 genomes]
rs860349	0.95[EUR][1000 genomes]
rs861113	0.95[EUR][1000 genomes]
rs865415	0.95[EUR][1000 genomes]
rs865416	0.95[EUR][1000 genomes]
rs940741	0.95[EUR][1000 genomes]
rs9767041	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1031548	chr6:64026862-64102045	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030651	chr6:64028392-64102045	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64040400-64071200	Weak transcription	Placenta	Placenta
2	chr6:64062600-64071200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:64063400-64065400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:64063800-64065400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:64063800-64065600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:64064200-64065200	Weak transcription	GM12878-XiMat	blood
7	chr6:64064200-64065200	Weak transcription	Hela-S3	cervix
8	chr6:64064200-64065200	Weak transcription	HepG2	liver
9	chr6:64064200-64065400	Weak transcription	Liver	Liver
10	chr6:64064400-64065600	Weak transcription	A549	lung

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