Variant report

Variant	rs17425634
Chromosome Location	chr4:141943052-141943053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:141942691..141944577-chr4:141956813..141958772,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10001746	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10213645	0.90[CEU][hapmap];0.96[GIH][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28445273	0.90[EUR][1000 genomes]
rs28627758	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9997698	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141929200-141955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:141937200-141944000	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:141940600-141943800	Enhancers	Fetal Stomach	stomach
4	chr4:141940800-141943600	Enhancers	Fetal Kidney	kidney
5	chr4:141940800-141944000	Enhancers	Fetal Lung	lung
6	chr4:141941000-141943800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:141941000-141943800	Enhancers	Fetal Brain Female	brain
8	chr4:141941400-141943200	Enhancers	Left Ventricle	heart
9	chr4:141941400-141943200	Enhancers	Ovary	ovary
10	chr4:141941400-141943200	Enhancers	Psoas Muscle	Psoas
11	chr4:141941400-141943400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr4:141941400-141943600	Enhancers	NHDF-Ad	bronchial
13	chr4:141941400-141943800	Enhancers	Adipose Nuclei	Adipose
14	chr4:141941400-141943800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr4:141941400-141943800	Enhancers	Fetal Muscle Leg	muscle
16	chr4:141941400-141943800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr4:141941400-141943800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr4:141941600-141943200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:141941600-141943400	Enhancers	NHLF	lung
20	chr4:141942000-141943200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:141942000-141943400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:141942000-141944000	Enhancers	Colon Smooth Muscle	Colon
23	chr4:141942200-141943200	Enhancers	Aorta	Aorta
24	chr4:141942200-141943400	Enhancers	Brain Angular Gyrus	brain
25	chr4:141942200-141944000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:141942400-141943600	Enhancers	Stomach Smooth Muscle	stomach
27	chr4:141942600-141943200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:141942600-141943200	Flanking Active TSS	Fetal Brain Male	brain
29	chr4:141942600-141943600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:141942800-141943200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:141942800-141943200	Enhancers	Right Ventricle	heart
32	chr4:141942800-141943200	Enhancers	Spleen	Spleen
33	chr4:141942800-141943400	Enhancers	Fetal Muscle Trunk	muscle
34	chr4:141942800-141943400	Enhancers	Right Atrium	heart
35	chr4:141942800-141948600	Weak transcription	Osteobl	bone
36	chr4:141943000-141943200	Enhancers	Brain Substantia Nigra	brain
37	chr4:141943000-141943200	Flanking Active TSS	Fetal Heart	heart
38	chr4:141943000-141948800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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